FFCP PHASE1:Hg19::chr11:392573..392586,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9025 | |||
|TSSclassifier=strong | |||
|UniProt=E9PQ15 | |||
|association_with_transcript=-27bp_to_ENST00000534401_5end | |||
|coexpression_cluster_id=C2129 | |||
|description=CAGE_peak_4_at_PKP3_5end | |||
|id=chr11:392573..392586,+ | |||
|ontology_enrichment_celltype=CL:0002159!2.38e-18!13;CL:0002251!1.68e-13!21;CL:0002076!1.50e-12!43;CL:0000223!3.79e-10!59;CL:0002077!8.35e-10!33;CL:0000066!1.58e-09!254;CL:0000349!5.59e-09!3;CL:0002577!5.59e-09!3;CL:0002621!1.24e-08!3;CL:0002166!2.03e-08!3;CL:0000362!5.41e-08!8;CL:0000622!6.69e-08!5;CL:0002541!2.43e-07!3;CL:0000240!4.32e-07!6;CL:0000311!4.32e-07!6;CL:0000079!4.32e-07!6;CL:0000237!4.32e-07!6;CL:0000036!4.32e-07!6;CL:0000357!4.32e-07!6;CL:0000114!4.32e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.46e-27;14!CL:0000349;6.63e-16;19!CL:0002577;9.80e-14;3!CL:0002621;3.49e-13;3!CL:0002166;8.97e-13;3!CL:0002077;1.21e-12;34!CL:0000362;2.95e-11;9!CL:0000240;5.16e-11;6!CL:0000311;5.16e-11;6!CL:0000079;5.16e-11;6!CL:0000237;5.16e-11;6!CL:0000575;1.33e-09;2!CL:0002327;1.85e-09;4!CL:0000317;3.61e-09;2!CL:1000448;3.61e-09;2!CL:0002308;3.61e-09;2!CL:0002140;3.61e-09;2!CL:0002536;5.51e-09;2!CL:0001014;7.27e-09;2!CL:0001016;7.27e-09;2!CL:0000312;5.23e-08;5!CL:0002537;6.93e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.31e-27,14;CL:0000349,6.46e-16,19;CL:0002077,1.46e-14,34;CL:0002577,9.81e-14,3;CL:0002621,3.64e-13,3;CL:0002166,8.13e-13,3;CL:0000362,2.89e-11,9;CL:0000240,4.53e-11,6;CL:0000311,4.53e-11,6;CL:0000079,4.53e-11,6;CL:0000237,4.53e-11,6;CL:0000036,4.53e-11,6;CL:0000357,4.53e-11,6;CL:0000114,4.53e-11,6;CL:0000066,4.64e-10,253;CL:0000575,1.30e-09,2;CL:0002327,1.87e-09,4;CL:0000317,3.62e-09,2;CL:1000448,3.62e-09,2;CL:0002308,3.62e-09,2;CL:0002140,3.62e-09,2;CL:0002536,5.85e-09,2;CL:0001014,8.03e-09,2;CL:0001016,8.03e-09,2;CL:0000312,5.11e-08,5;CL:0002537,6.62e-08,5;CL:0000076,8.44e-08,63 | |||
|ontology_enrichment_development_v019=CL:0000357;5.16e-11;6!CL:0000114;5.16e-11;6!UBERON:0008814;9.39e-09;2!UBERON:0010056;9.39e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!2.08e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!4.27e-23!14;UBERON:0000158!4.27e-23!14;UBERON:0003124!2.66e-16!7;UBERON:0000478!2.04e-14!24;UBERON:0000166!7.10e-14!21;UBERON:0000161!4.90e-13!35;UBERON:0003102!5.33e-13!95;UBERON:0003729!1.16e-11!5;UBERON:0000165!1.63e-11!28;UBERON:0000930!1.63e-11!28;UBERON:0001987!1.15e-10!4;UBERON:0004340!1.15e-10!4;UBERON:0004923!2.86e-10!57;UBERON:0003343!1.52e-09!4;UBERON:0004785!1.52e-09!4;UBERON:0000305!4.79e-09!7;UBERON:0001949!1.24e-08!3;UBERON:0001723!4.94e-08!3;UBERON:0001033!4.94e-08!3;UBERON:0010056!4.94e-08!3;UBERON:0004871!7.54e-08!8;UBERON:0001444!9.81e-08!48;UBERON:0000476!2.43e-07!3;UBERON:0000920!2.43e-07!3;UBERON:0005795!2.69e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.13e-15;24!UBERON:0000305;2.71e-14;7!UBERON:0005631;7.30e-14;10!UBERON:0000158;7.30e-14;10!UBERON:0001949;3.49e-13;3!UBERON:0001723;3.48e-12;3!UBERON:0001033;3.48e-12;3!UBERON:0001987;2.11e-10;4!UBERON:0003729;2.26e-10;13!UBERON:0000165;9.27e-10;28!UBERON:0001708;1.09e-09;4!UBERON:0008895;1.09e-09;4!UBERON:0001911;1.85e-09;4!UBERON:0002419;3.61e-09;2!UBERON:0007771;3.61e-09;2!UBERON:0003297;3.61e-09;2!UBERON:0001821;3.61e-09;2!UBERON:0003487;3.61e-09;2!UBERON:0001820;3.61e-09;2!UBERON:0001003;3.65e-09;15!UBERON:0007376;3.65e-09;15!UBERON:0010371;5.21e-09;31!UBERON:0000344;1.10e-08;20!UBERON:0011159;7.88e-08;5!UBERON:0000161;6.87e-07;19!UBERON:0000166;6.87e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.20e-22,14;UBERON:0000158,3.20e-22,14;UBERON:0000478,4.86e-15,24;UBERON:0000305,2.67e-14,7;UBERON:0001949,3.64e-13,3;UBERON:0003102,1.26e-12,99;UBERON:0004871,1.79e-12,8;UBERON:0001723,3.48e-12,3;UBERON:0001033,3.48e-12,3;UBERON:0010056,3.48e-12,3;UBERON:0004923,9.03e-12,66;UBERON:0000153,5.93e-11,62;UBERON:0007811,5.93e-11,62;UBERON:0000033,8.85e-11,56;UBERON:0003729,2.11e-10,13;UBERON:0001987,2.12e-10,4;UBERON:0004340,2.12e-10,4;UBERON:0000166,3.33e-10,22;UBERON:0003124,8.21e-10,7;UBERON:0001708,1.01e-09,4;UBERON:0008895,1.01e-09,4;UBERON:0001911,1.87e-09,4;UBERON:0005333,1.87e-09,4;UBERON:0008425,1.87e-09,4;UBERON:0005311,1.87e-09,4;UBERON:0000165,2.26e-09,29;UBERON:0000930,2.26e-09,29;UBERON:0001003,3.34e-09,15;UBERON:0007376,3.34e-09,15;UBERON:0007383,3.34e-09,15;UBERON:0002419,3.62e-09,2;UBERON:0007771,3.62e-09,2;UBERON:0003297,3.62e-09,2;UBERON:0001821,3.62e-09,2;UBERON:0003487,3.62e-09,2;UBERON:0001820,3.62e-09,2;UBERON:0005089,3.62e-09,2;UBERON:0005088,3.62e-09,2;UBERON:0000344,1.05e-08,20;UBERON:0004121,2.84e-08,171;UBERON:0000924,2.84e-08,171;UBERON:0006601,2.84e-08,171;UBERON:0005795,5.81e-08,22;UBERON:0011159,7.44e-08,5;UBERON:0003100,8.08e-08,41;UBERON:0001444,1.35e-07,49;UBERON:0008814,2.56e-07,18;UBERON:0000161,3.18e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,3.05817920982241,5.53910654279752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9288586487763,11.8651021691017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,7.73043412653187,6.54590689418003,8.60413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.523303371413,4.49607013030478,5.73015142746296,2.77765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,6.56136837907439,4.70349958956807,4.39502801451398,1.61205340865127,4.35950907770943,8.81780162079986,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,23.9470781442545,16.6435439510497,22.3768817063963,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20557117333613,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,4.59412430396938,7.15066270640173,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,1.7737206141467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01363417949149,8.90894042497916,3.99308912729002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.60098356119391,2.00070672109872,0,0,0,0.108647371922008,2.23300811812344,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11568069140386,1.39294730528644,0.17472666824203,0,0,0,0,8.43804443449249,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,2.12124631155116,0,0,0,0,0,0,0,0,0,0,0,0,1.99679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.349843349309,10.0594254092533,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,3.07734916982778,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.981477185010256,0.825788063434183,2.20114318226015,1.73288499225507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.383287282918786,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,2.91426595835484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,2.77204176471275,0,0,0,0,0,0,7.83780292429061,2.05339980651169,2.22261774948139,1.07583308089015,0,0,0,0,0,2.34640942403454,0.366724332548599,1.62758471326295,0,0,0 | |||
|short_description=p4@PKP3 | |||
}} |
Revision as of 05:47, 11 January 2014
Short description: | p4@PKP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PKP3_5end |
Coexpression cluster: | C2129_Placental_amniotic_Keratinocyte_Corneal_Gingival_Mammary_tongue |
Association with transcript: | -27bp_to_ENST00000534401_5end |
EntrezGene: | PKP3 |
HGNC: | 9025 |
UniProt: | E9PQ15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.31e-27 | 14 |
extraembryonic cell | 6.46e-16 | 19 |
ecto-epithelial cell | 1.46e-14 | 34 |
placental epithelial cell | 9.81e-14 | 3 |
gingival epithelial cell | 3.64e-13 | 3 |
epithelial cell of Malassez | 8.13e-13 | 3 |
epidermal cell | 2.89e-11 | 9 |
stratified squamous epithelial cell | 4.53e-11 | 6 |
keratin accumulating cell | 4.53e-11 | 6 |
stratified epithelial cell | 4.53e-11 | 6 |
keratinizing barrier epithelial cell | 4.53e-11 | 6 |
epithelial fate stem cell | 4.53e-11 | 6 |
stratified epithelial stem cell | 4.53e-11 | 6 |
surface ectodermal cell | 4.53e-11 | 6 |
epithelial cell | 4.64e-10 | 253 |
corneal epithelial cell | 1.30e-09 | 2 |
mammary gland epithelial cell | 1.87e-09 | 4 |
sebum secreting cell | 3.62e-09 | 2 |
epithelial cell of sweat gland | 3.62e-09 | 2 |
epithelial cell of skin gland | 3.62e-09 | 2 |
acinar cell of sebaceous gland | 3.62e-09 | 2 |
amniotic epithelial cell | 5.85e-09 | 2 |
CD1a-positive Langerhans cell | 8.03e-09 | 2 |
immature CD1a-positive Langerhans cell | 8.03e-09 | 2 |
keratinocyte | 5.11e-08 | 5 |
amnion mesenchymal stem cell | 6.62e-08 | 5 |
squamous epithelial cell | 8.44e-08 | 63 |