FFCP PHASE1:Hg19::chr12:4379117..4379138,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:4379117..4379138,+ | |||
|id=chr12:4379117..4379138,+ | |||
|ontology_enrichment_celltype=CL:0000838!3.02e-31!52;CL:0000542!2.04e-30!53;CL:0000051!2.04e-30!53;CL:0000945!1.08e-16!24;CL:0000826!1.08e-16!24;CL:0000236!6.21e-13!14;CL:0000988!1.40e-12!182;CL:0000084!2.54e-12!25;CL:0000827!2.54e-12!25;CL:0000791!2.89e-12!18;CL:0000789!2.89e-12!18;CL:0002420!2.89e-12!18;CL:0002419!2.89e-12!18;CL:0000790!2.89e-12!18;CL:0002087!4.07e-12!119;CL:0000037!5.36e-12!172;CL:0000566!5.36e-12!172;CL:0000738!6.38e-12!140;CL:0002031!4.73e-11!124;CL:0002032!9.93e-10!165;CL:0000837!9.93e-10!165;CL:0000625!1.30e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.14e-31;24!CL:0000236;3.37e-26;13!CL:0000542;1.46e-19;53!CL:0000625;2.36e-08;11!CL:0000784;2.59e-08;3!CL:0000791;1.08e-07;18!CL:0000789;1.08e-07;18!CL:0002419;1.08e-07;18!CL:0000084;1.34e-07;25!CL:0002127;2.81e-07;1!CL:0000785;2.81e-07;1!CL:0000911;2.81e-07;1!CL:0000819;2.81e-07;1!CL:0000814;2.81e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.55e-35,52;CL:0000542,1.42e-34,53;CL:0000051,1.42e-34,53;CL:0000945,3.92e-32,24;CL:0000826,3.92e-32,24;CL:0000236,8.97e-25,14;CL:0002087,6.26e-17,115;CL:0002031,4.83e-16,120;CL:0000738,3.60e-15,136;CL:0000988,8.72e-12,177;CL:0000037,2.08e-11,168;CL:0002032,7.63e-11,161;CL:0000837,7.63e-11,161;CL:0000625,2.66e-08,11;CL:0000784,4.05e-08,3;CL:0000791,1.21e-07,18;CL:0000789,1.21e-07,18;CL:0002420,1.21e-07,18;CL:0002419,1.21e-07,18;CL:0000790,1.21e-07,18;CL:0000084,1.54e-07,25;CL:0000827,1.54e-07,25;CL:0000819,2.82e-07,1;CL:0002127,3.17e-07,1;CL:0000914,3.17e-07,1;CL:0000911,3.17e-07,1;CL:0000814,3.17e-07,1;CL:0002042,3.17e-07,1;CL:0002039,3.17e-07,1;CL:0002040,3.17e-07,1;CL:0002041,3.17e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.46e-19;53!CL:0000790;1.08e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060073;2.81e-07;1!DOID:8675;2.81e-07;1!DOID:0060060;7.55e-07;1!DOID:0060061;7.55e-07;1!DOID:8691;7.55e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,2.82e-07,1;DOID:8675,2.82e-07,1;DOID:0060060,8.98e-07,1;DOID:0060061,8.98e-07,1;DOID:8691,8.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!6.84e-11!7;UBERON:0002370!5.48e-07!4;UBERON:0005058!5.48e-07!4;UBERON:0009113!5.48e-07!4;UBERON:0003295!5.48e-07!4;UBERON:0005562!5.48e-07!4;UBERON:0001042!8.42e-07!10;UBERON:0009145!8.42e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.59e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.04e-08,3;UBERON:0004854,6.04e-08,3;UBERON:0009034,6.04e-08,3;UBERON:0002095,6.04e-08,3;UBERON:0004782,6.04e-08,3;UBERON:0003281,6.04e-08,3;UBERON:0009664,6.04e-08,3;UBERON:0002296,6.04e-08,3;UBERON:0005602,6.04e-08,3;UBERON:0001179,6.04e-08,3;UBERON:0006293,6.04e-08,3;UBERON:0004177,1.45e-07,7;UBERON:0005057,1.45e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66784347590166,2.62721886239826,2.67616656466509,0.786728553697808,0,0,0,0,0,0,0,0.587200878669695,1.10799081706375,0,0,0,0.32389366601898,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,1.09227722252426,1.77901850772711,1.28019066769952,0.800791974072025,0.574752439954483,1.32208974556972,1.90810750907073,1.70763890732835,0,1.52909291250092,1.32171328579026,0,0.263384084775077,0.196709770113833,0,0.822405995998037,1.33749196312542,0.32592226663359,0,0,0.445641827540694,0,0,0.270803863765016,0.768547918354051,1.69077151827842,0.328875809207352,0.829050053357545,0.289803085735052,0.593146252648242,0.802622484269139,0,0,0.383220493601921,0.34362744548263,0,1.59282707162048,0.651083453856419,0,0.752875595388864,1.27986611154418,2.49861453104692,0.473554504088034,0,0.80642697289893,0,1.01377082717959,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,1.19245312152671,0.571994910780128,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.860413786167011,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.740707561268237,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12961773587702,0.394061520403854,0.862510299438069,1.28343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0.238231775457789,0,1.29694662238543,0.540031437238115,0,0.106824071127473,0,0,0,0,0,0,0,0.5745161103971,0.423347165447766,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.23874448473769,0,0,0,0,0,0,0,0,0.552567831062295,0,0,2.09244169283818,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0.166211681900156,0.225595660617181,0.19606253431774,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0.593042257361244,0.494255755786011,1.04421949505455,0.067401132980677,0,0,2.55436704901932,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.169346664131569,0,0,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0.414239055347196,0,1.38328142328561,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52183498429854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19992437512958,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0.336283722218824,0.606965604236632,0,0,0.345701962667338,0,0,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0,0.316027223465453,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0,0,0,1.03382309777839,1.03132620757723,0.399764623699716,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0,5.19463854146892,0,0.26721740526556,1.19463369395298,2.75778293221613,0,0,0,0,0,0.23806443146374,0.839655827868079,0.869046000142011,0,0,0,0.217716747896961,0.342233301085281,0.80822463617505,0.143444410785353,0,0,0,0,0,0,0,0,0,0.603821380773079,0.961705476909699 | |||
|short_description=p@chr12:4379117..4379138,+ | |||
}} |
Revision as of 11:33, 11 January 2014
Short description: | p@chr12:4379117..4379138, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:4379117..4379138, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
spleen | 6.04e-08 | 3 |
gastrointestinal system mesentery | 6.04e-08 | 3 |
stomach region | 6.04e-08 | 3 |
mesentery | 6.04e-08 | 3 |
gastrointestinal system serosa | 6.04e-08 | 3 |
mesentery of stomach | 6.04e-08 | 3 |
gut mesentery | 6.04e-08 | 3 |
dorsal mesentery | 6.04e-08 | 3 |
dorsal mesogastrium | 6.04e-08 | 3 |
peritoneal cavity | 6.04e-08 | 3 |
spleen primordium | 6.04e-08 | 3 |
hemopoietic organ | 1.45e-07 | 7 |
immune organ | 1.45e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 2.82e-07 | 1 |
lymphosarcoma | 2.82e-07 | 1 |
non-Hodgkin lymphoma | 8.98e-07 | 1 |
cutaneous T cell lymphoma | 8.98e-07 | 1 |
mycosis fungoides | 8.98e-07 | 1 |