FFCP PHASE1:Hg19::chr14:68189203..68189220,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145226 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19977 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=13bp_to_ENST00000539142_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_RDH12_5end | |||
|id=chr14:68189203..68189220,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0001014;2.99e-13;2!CL:0001016;2.99e-13;2!CL:0002252;1.89e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,2.34e-13,2;CL:0001016,2.34e-13,2;CL:0002252,2.21e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;7.50e-08;1!UBERON:0009143;1.89e-07;1!UBERON:0006222;3.61e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.22e-30!115;UBERON:0001049!4.72e-28!57;UBERON:0005068!4.72e-28!57;UBERON:0006241!4.72e-28!57;UBERON:0007135!4.72e-28!57;UBERON:0001017!9.07e-23!82;UBERON:0005743!1.26e-22!86;UBERON:0002616!7.34e-22!59;UBERON:0000955!9.68e-22!69;UBERON:0006238!9.68e-22!69;UBERON:0003075!5.48e-21!86;UBERON:0007284!5.48e-21!86;UBERON:0002780!5.64e-21!41;UBERON:0001890!5.64e-21!41;UBERON:0006240!5.64e-21!41;UBERON:0000073!1.90e-20!94;UBERON:0001016!1.90e-20!94;UBERON:0003080!2.75e-20!42;UBERON:0002346!1.70e-19!90;UBERON:0000153!2.66e-18!129;UBERON:0007811!2.66e-18!129;UBERON:0003056!1.57e-16!61;UBERON:0004121!3.96e-16!169;UBERON:0000033!4.97e-16!123;UBERON:0000924!2.19e-15!173;UBERON:0006601!2.19e-15!173;UBERON:0002020!2.96e-13!34;UBERON:0003528!2.96e-13!34;UBERON:0001893!3.42e-13!34;UBERON:0001869!9.61e-13!32;UBERON:0002791!3.70e-12!33;UBERON:0001894!2.44e-11!7;UBERON:0006222!2.44e-11!7;UBERON:0002619!2.95e-09!22;UBERON:0003076!6.52e-09!15;UBERON:0003057!6.52e-09!15;UBERON:0000475!2.24e-08!365;UBERON:0000956!8.44e-08!25;UBERON:0000203!8.44e-08!25;UBERON:0002308!1.07e-07!9;UBERON:0000125!1.07e-07!9;UBERON:0003296!2.22e-07!4;UBERON:0010133!2.22e-07!4;UBERON:0001950!3.47e-07!20;UBERON:0000200!8.90e-07!6;UBERON:0000483!9.24e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002784;1.02e-14;4!UBERON:0001894;2.66e-14;7!UBERON:0001905;8.05e-14;2!UBERON:0002757;8.05e-14;2!UBERON:0010134;8.05e-14;2!UBERON:0005408;8.05e-14;2!UBERON:0001899;8.05e-14;2!UBERON:0001723;3.18e-09;3!UBERON:0001033;3.18e-09;3!UBERON:0001043;4.14e-09;3!UBERON:0005795;9.70e-08;1!UBERON:0007029;1.03e-07;1!UBERON:0002372;1.89e-07;1!UBERON:0001961;1.89e-07;1!UBERON:0001744;1.89e-07;1!UBERON:0001042;1.89e-07;1!UBERON:0001735;1.89e-07;1!UBERON:0003296;2.50e-07;4!UBERON:0010133;2.50e-07;4!UBERON:0001041;2.89e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002784,9.99e-15,4;UBERON:0001894,2.20e-14,7;UBERON:0006222,2.20e-14,7;UBERON:0001905,8.06e-14,2;UBERON:0002757,8.06e-14,2;UBERON:0010134,8.06e-14,2;UBERON:0005408,8.06e-14,2;UBERON:0001899,8.06e-14,2;UBERON:0007023,2.16e-10,114;UBERON:0001723,2.99e-09,3;UBERON:0001033,2.99e-09,3;UBERON:0010056,2.99e-09,3;UBERON:0001043,4.68e-09,3;UBERON:0009143,4.68e-09,3;UBERON:0007029,1.03e-07,1;UBERON:0004121,1.35e-07,171;UBERON:0000924,1.35e-07,171;UBERON:0006601,1.35e-07,171;UBERON:0002372,1.83e-07,1;UBERON:0001961,1.83e-07,1;UBERON:0001744,1.83e-07,1;UBERON:0001735,1.83e-07,1;UBERON:0003296,2.50e-07,4;UBERON:0010133,2.50e-07,4;UBERON:0010371,3.20e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,3.05265836499774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0.121973706129595,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.658501712451753,2.24803506515239,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,3.90036147621913,0,0,0,0,0,0.107420244868274,0,0,0,0.330569830721956,0.192190067365106,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0,0,0,0,0,1.7737206141467,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0,0,0,0.344743373241465,0,0,0,0.241192877250816,0,0.442317039724898,1.18219047581419,1.09692698576986,0,1.25481369850743,5.61736887077719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0,1.87411556580271,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0,0,3.29762656060626,0,60.1108770476216,0,0,0.696418755514666,0,0,36.5004621004293,0,0,0,1.20116498503375,0,0,0.235694034616795,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0,0,3.18091875923721,0.544813624446302,0.160753148465019,0,0,1.799791132412,19.3450488639487,0.668245123238271,0.670869375198532,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,1.29282956361551,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.3755727921195,0,0.332787154610557,0.248385611765534,0.138348634936231,0,0,0,0,0.936669811613763,0.144921028610825,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0.553033744606923,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0.80057074828547,0,0,0.385375350578757,0,0,0.615349092722265,0,0.899044282034833,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0.675375846183947,0,0,0.697573912132975,0,0,0.992422356778588,0,0,31.0707064809406,8.4070930554706,0.606965604236632,0.227662191351298,0,0,0,0.815636795721981,0.526182188502793,0,0,0,0.314231179832004,0,0,0,0,44.4584104778802,0.316027223465453,0,0,0,0,0.3414369541879,21.4290495162368,0,0,0,0,0,0,0,0,0,0.365753774946808,0,0,1.1598144313382,10.1999308542419,0,0,0,0,0.219881033490858,0.754814217833368,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0.297046400327086,0.8453114551668,0,0,0.0644578879735772,0,0,0.352894871715692,0,4.3820183294791,0,0,0,1.29183831362738,0,0.5290268405154,0,0,0,0.252332849670158,0.109265571963696,0,0,0.26721740526556,0,0,0.151557396436479,0.267964130156178,2.48750831837634,0.103432995861895,5.5440835294255,0.23806443146374,0.129177819672012,0.186224142887574,0,0.318235791390825,7.27621880249589,6.09606894111492,3.42233301085281,3.30025059771479,0,0,0,0,0,0,0,0.488965776731466,13.4275738844194,0,0.201273793591026,0 | |||
|short_description=p1@RDH12 | |||
}} |
Revision as of 20:42, 11 January 2014
Short description: | p1@RDH12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH12_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 13bp_to_ENST00000539142_5end |
EntrezGene: | RDH12 |
HGNC: | 19977 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 2.34e-13 | 2 |
immature CD1a-positive Langerhans cell | 2.34e-13 | 2 |
epithelial cell of esophagus | 2.21e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
regional part of diencephalon | 9.99e-15 | 4 |
diencephalon | 2.20e-14 | 7 |
future diencephalon | 2.20e-14 | 7 |
pineal body | 8.06e-14 | 2 |
regional part of epithalamus | 8.06e-14 | 2 |
secretory circumventricular organ | 8.06e-14 | 2 |
circumventricular organ | 8.06e-14 | 2 |
epithalamus | 8.06e-14 | 2 |
adult organism | 2.16e-10 | 114 |
tongue | 2.99e-09 | 3 |
gustatory system | 2.99e-09 | 3 |
future tongue | 2.99e-09 | 3 |
esophagus | 4.68e-09 | 3 |
esophageal region | 4.68e-09 | 3 |
surface | 1.03e-07 | 1 |
ectoderm-derived structure | 1.35e-07 | 171 |
ectoderm | 1.35e-07 | 171 |
presumptive ectoderm | 1.35e-07 | 171 |
tonsil | 1.83e-07 | 1 |
mucosa-associated lymphoid tissue | 1.83e-07 | 1 |
lymphoid tissue | 1.83e-07 | 1 |
tonsillar ring | 1.83e-07 | 1 |
gland of diencephalon | 2.50e-07 | 4 |
neuroendocrine gland | 2.50e-07 | 4 |
ecto-epithelium | 3.20e-07 | 104 |