FFCP PHASE1:Hg19::chr17:47287749..47287777,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51225 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29859 | |||
|TSSclassifier=strong | |||
|UniProt=Q9P2A4 | |||
|association_with_transcript=0bp_to_ENST00000419580_5end | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_2_at_ABI3_5end | |||
|id=chr17:47287749..47287777,+ | |||
|ontology_enrichment_celltype=CL:0000115!1.89e-23!35;CL:0002139!2.23e-19!24;CL:0002078!2.23e-18!44;CL:0000071!3.77e-15!18;CL:0002546!3.77e-15!18;CL:0000213!1.88e-09!57;CL:0000215!1.88e-09!57;CL:1000413!1.93e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.97e-29;24!CL:0000115;3.08e-27;36!CL:0000071;8.15e-23;18!CL:0002078;1.70e-16;45!CL:1000413;2.50e-12;9!CL:0000213;3.77e-10;58!CL:0000215;3.77e-10;58!CL:0002543;9.30e-09;6!CL:0002544;1.07e-08;6!CL:0002138;3.69e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.63e-32,36;CL:0002139,2.05e-29,24;CL:0002078,3.08e-26,45;CL:0000071,8.67e-23,18;CL:0002546,8.67e-23,18;CL:0000213,7.25e-16,58;CL:0000215,7.25e-16,58;CL:1000413,2.63e-12,9;CL:0000222,4.88e-09,121;CL:0002543,9.41e-09,6;CL:0002544,1.09e-08,6;CL:0005020,3.62e-08,6;CL:0002138,3.62e-08,6;CL:0005022,3.62e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002546;8.15e-23;18!CL:0005022;3.69e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.21e-20!115;UBERON:0001986!3.77e-15!18;UBERON:0004638!3.77e-15!18;UBERON:0004852!3.77e-15!18;UBERON:0000477!1.02e-12!286;UBERON:0000025!4.39e-12!194;UBERON:0000487!1.19e-11!22;UBERON:0003081!1.67e-11!216;UBERON:0004111!1.72e-11!241;UBERON:0001009!2.95e-10!113;UBERON:0006914!6.41e-10!25;UBERON:0002049!2.36e-09!79;UBERON:0007798!2.36e-09!79;UBERON:0004872!2.41e-09!84;UBERON:0003914!2.48e-09!118;UBERON:0004535!2.68e-09!110;UBERON:0003915!1.93e-08!9;UBERON:0004700!1.93e-08!9;UBERON:0001917!1.93e-08!9;UBERON:0000055!2.95e-08!69;UBERON:0000119!4.26e-08!312;UBERON:0000467!5.96e-08!625;UBERON:0000480!8.28e-08!626;UBERON:0000483!1.05e-07!309;UBERON:0003887!2.21e-07!21;UBERON:0000468!4.81e-07!659;UBERON:0003103!6.29e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.15e-23;18!UBERON:0001986;8.15e-23;18!UBERON:0004852;8.15e-23;18!UBERON:0000487;2.60e-17;22!UBERON:0006914;2.24e-14;25!UBERON:0003915;2.50e-12;9!UBERON:0004700;2.50e-12;9!UBERON:0001917;2.50e-12;9!UBERON:0000490;8.77e-10;33!UBERON:0000055;8.74e-08;65!UBERON:0002465;5.15e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,8.67e-23,18;UBERON:0001986,8.67e-23,18;UBERON:0004852,8.67e-23,18;UBERON:0000487,2.72e-17,22;UBERON:0007023,1.66e-16,114;UBERON:0003914,3.26e-16,117;UBERON:0000055,9.06e-16,68;UBERON:0004111,9.61e-15,240;UBERON:0004872,1.16e-14,83;UBERON:0006914,2.32e-14,25;UBERON:0001009,3.97e-13,112;UBERON:0002049,6.45e-13,78;UBERON:0007798,6.45e-13,78;UBERON:0000025,7.64e-13,192;UBERON:0007500,1.96e-12,59;UBERON:0001981,1.96e-12,59;UBERON:0004537,1.96e-12,59;UBERON:0006965,1.96e-12,59;UBERON:0003915,2.63e-12,9;UBERON:0004700,2.63e-12,9;UBERON:0001917,2.63e-12,9;UBERON:0004535,1.01e-11,109;UBERON:0003103,2.73e-10,68;UBERON:0003081,5.20e-10,203;UBERON:0000119,3.46e-08,309;UBERON:0000483,1.37e-07,306;UBERON:0002465,4.23e-07,10;UBERON:0001638,8.52e-07,9;UBERON:0003920,8.52e-07,9;UBERON:0004582,8.52e-07,9;UBERON:0007100,9.33e-07,27;UBERON:0000926,9.97e-07,315;UBERON:0004120,9.97e-07,315;UBERON:0006603,9.97e-07,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0.697801167972428,0.436882744260345,0,0.123766352960047,0,2.01697543935533,1.80808358407193,1.46062018077475,1.46379839637152,0.738726348460727,0.612002073732759,0,0.286235987131057,0,0,0.382067028739756,0.656804715599566,0.393553906568396,0.786728553697808,0.383829398097213,0.154816123316076,0,0,0,0.309868802321207,0.284338464974843,0,0,0,0.434021741431704,2.91090116511902,0.32389366601898,1.28787783817093,1.16318591023652,2.26725566213286,2.42584061187816,0.232429036905685,2.46700732813095,1.54853185447552,0.575384784644301,0.256160706529101,0,0.689491361473237,0,0,0.752969358170419,1.36453075028923,2.24723484445085,0.612167784741805,1.28371610830437,0.639337125799041,0.329851300186716,0.997318288108159,0.852449501065388,0,0.56738522469114,0.622822248995575,0.251248665256743,0,0.65156653411535,1.81619850790011,0.368277635987565,0.632924774881769,0.422510572623884,0.850417199860174,0.838634582033504,0.336985893439485,0.600707571366025,0,0.570025487482497,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0.196709770113833,0,0,0.501559486172034,0,0.473447805734733,0,0.111410456885174,0.294605907474837,0.221533894583621,0,0.128091319725675,0.390178042679635,0.164437904603676,0,0,0.296573126324121,0,0,0.339928028092699,0,0,0,0.637130828648193,0,1.90090408889675,0.301150238155546,1.02389288923535,1.24930726552346,0.947109008176067,1.64225599384209,0.403213486449465,0.267440195783507,0,0,3.35350429851818,1.40648818027883,1.0843174571537,0,0,0,0.486634870302636,0.378139268656271,1.99556457716308,0.966182642624386,3.1434978119451,0,0,3.24547393654683,1.74129737299267,6.38198210490553,0,0,0,18.6836662924703,19.7853956874409,25.3412566173544,15.2633144319483,25.1699661725944,31.9136928650478,23.6164312186596,6.97725249757188,10.6729878806013,5.69025041699939,16.1131726843659,12.9246257972147,10.9827925896676,18.0154909369476,21.0636906449257,12.7698611446234,16.6151735743366,18.0178368773316,49.0613239890826,47.4632829784064,27.4802615895611,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,2.1349799145941,2.4666754841716,0.311211035399766,1.0776853765575,1.14423332179421,0.151357427644931,0,0.468642863667593,0,5.13424639390004,0,0.587172493218824,0.485618833104395,0.702254033511242,0.204154171254893,1.22834317311768,0,0,0,0,0,0.841680569770331,5.50521487436642,0,0.438977620880838,0,0.150238058906597,1.02088964844019,1.61450672119976,0,0,0.300091096084402,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0.10075209822764,0.67824236924195,0,0,0,0.487894824518382,0.265059536642971,1.51052125730374,1.24393266018445,1.00928340350251,1.45990943630332,0,0.643240938192885,5.52539685409922,0,0,0,0,0,0,0,0,0,0,0,14.0249536378683,9.81692416624121,2.8810180793198,1.47008711385542,0,0,2.95394953340702,0,0.122988438543114,0.857839051492628,0,0,0,0,0,0,4.3299402607582,0.463721619900307,0.234817388471643,15.1584770149128,16.2044929401814,12.7470281997181,0,0,1.96973604869918,2.80805118167085,2.52672975890838,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,6.05507855464948,0,9.16728572761875,0,3.57656445851882,1.690605505112,0,0,1.80045161983499,0,0.266422179016099,0,0,0,0.977208552881205,0,0,0,0,0,0,2.00902836572851,4.21667878966063,0,0,0,0,0,0,0.336255431980582,0.788123040807709,0.431255149719035,0.256686072559497,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,2.65690239414175,1.47495334833363,0.260650843404249,0.979005787313703,0.686286847621712,0.413536052245775,0,0.533637789017222,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0.160853921143607,0,1.69630663182921,0,0.246381468041427,0,0,0,0,0,2.75554675595056,0.364182336013434,0,2.25599806453706,0.15403067420883,3.13739907670742,1.46139224653261,0.527758144464379,15.9226737699255,23.8131187387122,5.39789790255348,41.6413582263781,0.812839312631559,1.50506932156456,3.82314409567557,0,3.80587083027703,0,0,0,0,0,3.81251743096572,0.0915694648183434,0,0,0,0,0.580024309752732,2.15668063960502,1.99554777143968,0.964856007391714,0.322260734604821,2.90033387828457,1.70453254832202,0.356128142586949,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0.744316738719335,0.949138274156178,0,0,0,4.13664222303718,0,0,0.274537029736055,0,0,0,0.421258456238981,0.975267478179181,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0.563391205064483,0,0,0,0.354761064070598,0.633322905892992,0,0.75894634753143,0.699869440489966,0,0,0,3.29503302718727,0,0,0,0,0.507447609232169,1.52927441428475,0,0.476463550915578,0.822724546172388,0,0,0,0,0,0,0,0.432807638929335,0,0.478278818186467,0.199579371432817,0.191505370132367,0,0,0,0,0,0,0.338583555603207,0.1605880751037,0,0,0.343505344755765,0,0,0,0,0,0,0,0.66614393599564,0,0,3.51619630252546,0,0,0,0,0.296964680832639,0,1.9882952955326,0.984685914873589,0,0.16480387422676,0,2.78947183551498,1.38141957765574,0,0,0.369254416383208,0,0,0,0,1.479651084554,0,0,0,1.02044907978036,1.99613798001194,0,0,5.0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| |||
|short_description=p2@ABI3 | |||
}} |
Revision as of 16:05, 20 January 2014
Short description: | p2@ABI3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ABI3_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 0bp_to_ENST00000419580_5end |
EntrezGene: | ABI3 |
HGNC: | 29859 |
UniProt: | Q9P2A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.63e-32 | 36 |
endothelial cell of vascular tree | 2.05e-29 | 24 |
meso-epithelial cell | 3.08e-26 | 45 |
blood vessel endothelial cell | 8.67e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.67e-23 | 18 |
lining cell | 7.25e-16 | 58 |
barrier cell | 7.25e-16 | 58 |
endothelial cell of artery | 2.63e-12 | 9 |
mesodermal cell | 4.88e-09 | 121 |
vein endothelial cell | 9.41e-09 | 6 |
aortic endothelial cell | 1.09e-08 | 6 |
lymphangioblast | 3.62e-08 | 6 |
endothelial cell of lymphatic vessel | 3.62e-08 | 6 |
vascular lymphangioblast | 3.62e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 8.67e-23 | 18 |
endothelium | 8.67e-23 | 18 |
cardiovascular system endothelium | 8.67e-23 | 18 |
simple squamous epithelium | 2.72e-17 | 22 |
adult organism | 1.66e-16 | 114 |
epithelial tube | 3.26e-16 | 117 |
vessel | 9.06e-16 | 68 |
anatomical conduit | 9.61e-15 | 240 |
splanchnic layer of lateral plate mesoderm | 1.16e-14 | 83 |
squamous epithelium | 2.32e-14 | 25 |
circulatory system | 3.97e-13 | 112 |
vasculature | 6.45e-13 | 78 |
vascular system | 6.45e-13 | 78 |
tube | 7.64e-13 | 192 |
epithelial tube open at both ends | 1.96e-12 | 59 |
blood vessel | 1.96e-12 | 59 |
blood vasculature | 1.96e-12 | 59 |
vascular cord | 1.96e-12 | 59 |
endothelial tube | 2.63e-12 | 9 |
arterial system endothelium | 2.63e-12 | 9 |
endothelium of artery | 2.63e-12 | 9 |
cardiovascular system | 1.01e-11 | 109 |
compound organ | 2.73e-10 | 68 |
lateral plate mesoderm | 5.20e-10 | 203 |
cell layer | 3.46e-08 | 309 |
epithelium | 1.37e-07 | 306 |
lymphoid system | 4.23e-07 | 10 |
vein | 8.52e-07 | 9 |
venous blood vessel | 8.52e-07 | 9 |
venous system | 8.52e-07 | 9 |
primary circulatory organ | 9.33e-07 | 27 |
mesoderm | 9.97e-07 | 315 |
mesoderm-derived structure | 9.97e-07 | 315 |
presumptive mesoderm | 9.97e-07 | 315 |