FFCP PHASE1:Hg19::chr2:37551788..37551799,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23683 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9408 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-275bp_to_ENST00000477132_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_12_at_PRKD3_5end | |||
|id=chr2:37551788..37551799,- | |||
|ontology_enrichment_celltype=CL:0000148!3.08e-10!10;CL:0000541!3.08e-10!10;CL:0000147!5.84e-10!14 | |||
|ontology_enrichment_celltype_v019=CL:0000148;8.59e-65;10!CL:0002567;2.61e-54;3!CL:0000147;2.47e-46;14!CL:0000710;1.82e-32;20!CL:0000075;4.64e-24;27!CL:0002566;8.94e-20;1!CL:0002077;6.35e-18;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.49e-64,10;CL:0000541,1.49e-64,10;CL:0002567,6.50e-54,3;CL:0000147,3.66e-46,14;CL:0000710,2.39e-32,20;CL:0000075,5.68e-24,27;CL:0002566,8.95e-20,1;CL:0002077,4.92e-19,34;CL:0000333,4.89e-15,41;CL:0000133,1.46e-10,59;CL:0000221,1.12e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.72e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.49e-10,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001389;3.25e-19;1!UBERON:0000026;3.25e-19;1!UBERON:0008784;3.25e-19;1!UBERON:0006058;3.25e-19;1!UBERON:0003663;3.25e-19;1!UBERON:0004256;3.25e-19;1!UBERON:0004708;3.25e-19;1!UBERON:0002101;3.25e-19;1!UBERON:0004709;3.25e-19;1!UBERON:0002529;3.25e-19;1!UBERON:0010538;3.25e-19;1!UBERON:0003661;3.25e-19;1!UBERON:0010890;3.25e-19;1!UBERON:0002471;3.25e-19;1!UBERON:0001383;3.25e-19;1!UBERON:0010758;3.25e-19;1!UBERON:0010707;3.25e-19;1!UBERON:0000978;3.25e-19;1!UBERON:0002103;3.25e-19;1!UBERON:0001665;3.25e-19;1!UBERON:0003823;3.25e-19;1!UBERON:0000154;3.25e-19;1!UBERON:0010709;3.25e-19;1!UBERON:0005090;2.72e-10;2!UBERON:0001630;2.72e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,3.25e-19,1;UBERON:0001389,3.25e-19,1;UBERON:0000026,3.25e-19,1;UBERON:0008784,3.25e-19,1;UBERON:0006058,3.25e-19,1;UBERON:0003663,3.25e-19,1;UBERON:0004256,3.25e-19,1;UBERON:0004708,3.25e-19,1;UBERON:0002101,3.25e-19,1;UBERON:0004709,3.25e-19,1;UBERON:0002529,3.25e-19,1;UBERON:0010538,3.25e-19,1;UBERON:0003661,3.25e-19,1;UBERON:0010890,3.25e-19,1;UBERON:0002471,3.25e-19,1;UBERON:0001383,3.25e-19,1;UBERON:0004357,3.25e-19,1;UBERON:0004347,3.25e-19,1;UBERON:0005420,3.25e-19,1;UBERON:0005732,3.25e-19,1;UBERON:0010758,3.25e-19,1;UBERON:0010707,3.25e-19,1;UBERON:0000978,3.25e-19,1;UBERON:0002103,3.25e-19,1;UBERON:0001665,3.25e-19,1;UBERON:0003823,3.25e-19,1;UBERON:0000154,3.25e-19,1;UBERON:0010709,3.25e-19,1;UBERON:0005733,3.25e-19,1;UBERON:0005730,3.25e-19,1;UBERON:0005090,2.72e-10,2;UBERON:0001630,2.72e-10,2 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0.542270404062111,0,0,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0.546138611262131,0,0,0,0,0.661044872784862,0,1.70763890732835,0.587237189370939,0.382273228125229,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0.622422070799533,0.134710672069688,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,5.84180627487955,1.14596527667483,1.17217447210047,3.4214489204541,0.308482478109971,3.30377363628309,3.42991719156694,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.224170287987055,0.197030760201927,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0.154209693802656,0,0.246381468041427,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0.308033580176089,0,0.869932992075073,0,0.143124886741991,0.372158369359667,0,0,0,0,0.318203247925937,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0.199579371432817,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0.422008249231538,0.333926115068718,0.16480387422676,0,0.19924798825107,0.276283915531148,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0.472775363535873,0,0,0,0,0.120596438625408,0,0,0,0,0.21787692703798,0.278847488557207,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0,0.166211681900156,0,0,0,0,0,0,0.489698424477443,0,0.216388639742091,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.505492637027904,0.901940516486955,0.103688191397247,0,0,0,0,0,0,0,0,0.174118413160805,0.17472666824203,0,0.19351266257817,0.146178634172371,0.328461828212837,0.193978032976839,0,0.90392296312213,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0.101998217636322,0.577901179803038,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0.0824158583811665,0.202210631562555,0.0984274815147488,0,0,0.408610218334727,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0.179287339332845,0,0,0,0.5085370753095,0,0,0,0,0,0.340776043570843,0.226624183040251,0,0,0,0.26446520348538,0,0,0,0,0,0,0.395223263795889,0.365377795142688,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0.303298235083296,1.42732666772484,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.655219697692825,0,0,0.19998739585493,0.106691729694141,0.344429959321631,0,0,0,0,0,0,0,0.109209638192014,0,0.212574920101683,0,0,0.318004350653419,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.392590874004102,0,0,0,0,0,0.198916222116275,0.225630985047772,0,0,0,0,0,0.202612753855184,0,0,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0.227662191351298,0,0.460935950223117,0,0.0679697329768317,0,0,0.111231401892069,0,0,0,0,0,0,0.857718530119876,0,0,0.173858272302579,0.801711364730253,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,1.29485767437579,0.307988420568741,0,0,0,0,0,1.80713731262336,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0.162806537221949,0,0,0.0898252021065869,0,0.244482888365733,0,0,0,0 | |||
|short_description=p12@PRKD3 | |||
}} |
Revision as of 02:36, 21 January 2014
Short description: | p12@PRKD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PRKD3_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -275bp_to_ENST00000477132_5end |
EntrezGene: | PRKD3 |
HGNC: | 9408 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.49e-64 | 10 |
melanoblast | 1.49e-64 | 10 |
light melanocyte | 6.50e-54 | 3 |
pigment cell | 3.66e-46 | 14 |
neurecto-epithelial cell | 2.39e-32 | 20 |
columnar/cuboidal epithelial cell | 5.68e-24 | 27 |
dark melanocyte | 8.95e-20 | 1 |
ecto-epithelial cell | 4.92e-19 | 34 |
migratory neural crest cell | 4.89e-15 | 41 |
neurectodermal cell | 1.46e-10 | 59 |
ectodermal cell | 1.12e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
hindlimb bud | 3.25e-19 | 1 |
soleus muscle | 3.25e-19 | 1 |
appendage | 3.25e-19 | 1 |
lower limb segment | 3.25e-19 | 1 |
multi-limb segment region | 3.25e-19 | 1 |
hindlimb muscle | 3.25e-19 | 1 |
hindlimb zeugopod muscle | 3.25e-19 | 1 |
paired limb/fin | 3.25e-19 | 1 |
limb | 3.25e-19 | 1 |
pelvic appendage | 3.25e-19 | 1 |
limb segment | 3.25e-19 | 1 |
paired limb/fin segment | 3.25e-19 | 1 |
limb muscle | 3.25e-19 | 1 |
pelvic complex muscle | 3.25e-19 | 1 |
zeugopod | 3.25e-19 | 1 |
muscle of leg | 3.25e-19 | 1 |
paired limb/fin bud | 3.25e-19 | 1 |
limb bud | 3.25e-19 | 1 |
pelvic appendage bud | 3.25e-19 | 1 |
limb/fin field | 3.25e-19 | 1 |
subdivision of organism along appendicular axis | 3.25e-19 | 1 |
appendage girdle complex | 3.25e-19 | 1 |
leg | 3.25e-19 | 1 |
hindlimb | 3.25e-19 | 1 |
triceps surae | 3.25e-19 | 1 |
hindlimb zeugopod | 3.25e-19 | 1 |
posterior region of body | 3.25e-19 | 1 |
pelvic complex | 3.25e-19 | 1 |
limb field | 3.25e-19 | 1 |
hindlimb/pelvic fin field | 3.25e-19 | 1 |
muscle structure | 2.72e-10 | 2 |
muscle organ | 2.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.49e-10 | 2 |