FFCP PHASE1:Hg19::chr20:6035530..6035548,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_at_chr20:6035530..6035548,+ | |||
|id=chr20:6035530..6035548,+ | |||
|ontology_enrichment_celltype=CL:1000497!9.87e-15!18;CL:0002518!9.87e-15!18;CL:0000077!1.57e-14!19;CL:1000507!2.05e-14!12;CL:1000494!2.05e-14!12;CL:1000449!4.34e-12!16;CL:0002274!7.83e-10!5;CL:0000457!7.83e-10!5;CL:0002191!7.83e-10!5;CL:0000097!7.83e-10!5;CL:0000831!7.83e-10!5;CL:0002028!7.83e-10!5;CL:0002681!2.40e-08!13;CL:0002584!2.40e-08!13;CL:0000163!3.27e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000077;2.25e-22;19!CL:0000097;6.97e-21;5!CL:1000507;2.65e-17;10!CL:1000494;2.65e-17;10!CL:0000163;3.25e-16;9!CL:1000497;4.28e-16;17!CL:0002518;4.28e-16;17!CL:1000449;3.27e-11;15!CL:0002195;4.14e-08;2!CL:0002571;4.14e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,2.35e-22,19;CL:0000097,6.98e-21,5;CL:0002028,6.98e-21,5;CL:1000507,2.37e-17,10;CL:1000494,2.37e-17,10;CL:0000163,3.25e-16,9;CL:1000497,3.62e-16,17;CL:0002518,3.62e-16,17;CL:1000449,3.04e-11,15;CL:0000213,3.68e-08,58;CL:0000215,3.68e-08,58;CL:0002195,5.07e-08,2;CL:0002571,5.07e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.35e-15!14;DOID:120!1.53e-10!27;DOID:193!1.62e-09!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.54e-25;14!DOID:120;7.98e-18;27!DOID:193;2.07e-16;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.51e-25,14;DOID:120,8.18e-18,27;DOID:193,2.11e-16,29;DOID:162,3.00e-07,235;DOID:14566,5.80e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0009773!2.05e-14!12;UBERON:0001231!2.05e-14!12;UBERON:0004810!2.05e-14!12;UBERON:0006555!5.44e-13!17;UBERON:0005103!5.44e-13!17;UBERON:0000083!5.44e-13!17;UBERON:0009201!5.44e-13!17;UBERON:0004819!5.44e-13!17;UBERON:0006553!5.44e-13!17;UBERON:0003074!5.44e-13!17;UBERON:0003060!5.44e-13!17;UBERON:0002113!2.22e-12!27;UBERON:0003918!2.22e-12!27;UBERON:0005095!2.22e-12!27;UBERON:0007687!2.22e-12!27;UBERON:0004211!4.34e-12!16;UBERON:0001285!4.34e-12!16;UBERON:0007684!4.34e-12!16;UBERON:0003220!4.34e-12!16;UBERON:0004208!4.34e-12!16;UBERON:0000080!4.58e-12!18;UBERON:0002120!4.58e-12!18;UBERON:0004875!4.58e-12!18;UBERON:0005721!4.58e-12!18;UBERON:0005754!4.58e-12!18;UBERON:0007297!4.58e-12!18;UBERON:0003887!3.02e-11!21;UBERON:0003886!3.47e-11!63;UBERON:0000489!6.24e-11!32;UBERON:0005172!1.06e-10!55;UBERON:0005173!1.06e-10!55;UBERON:0004876!1.69e-10!20;UBERON:0000992!1.75e-10!13;UBERON:0002553!2.68e-09!70;UBERON:0002417!5.69e-09!61;UBERON:0000916!5.69e-09!61;UBERON:0006554!2.08e-08!44;UBERON:0001225!2.40e-08!13;UBERON:0008987!2.40e-08!13;UBERON:0001851!3.56e-08!16;UBERON:0003103!4.00e-08!69;UBERON:0001008!4.18e-08!45;UBERON:0002118!4.60e-08!5;UBERON:0004532!4.60e-08!5;UBERON:0003064!1.03e-07!37;UBERON:0000353!2.15e-07!17;UBERON:0000058!2.73e-07!26;UBERON:0000991!9.00e-07!21;UBERON:0009196!9.00e-07!21;UBERON:0009117!9.00e-07!21;UBERON:0005564!9.00e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.65e-17;10!UBERON:0009773;2.65e-17;10!UBERON:0001231;2.65e-17;10!UBERON:0004810;2.65e-17;10!UBERON:0000992;4.04e-13;13!UBERON:0006555;3.27e-11;15!UBERON:0004819;3.27e-11;15!UBERON:0001285;3.27e-11;15!UBERON:0007684;3.27e-11;15!UBERON:0002113;6.34e-11;24!UBERON:0011143;6.34e-11;24!UBERON:0005172;8.41e-10;52!UBERON:0005173;8.41e-10;52!UBERON:0002119;5.45e-09;4!UBERON:0000489;9.14e-09;29!UBERON:0006554;2.02e-08;30!UBERON:0001008;2.02e-08;30!UBERON:0000991;9.42e-08;21!UBERON:0002118;2.33e-07;5!UBERON:0002417;4.28e-07;58!UBERON:0000916;4.28e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.37e-17,10;UBERON:0000992,4.24e-13,13;UBERON:0005172,7.23e-12,54;UBERON:0005173,7.23e-12,54;UBERON:0004211,3.04e-11,15;UBERON:0009773,3.04e-11,15;UBERON:0001231,3.04e-11,15;UBERON:0001285,3.04e-11,15;UBERON:0007684,3.04e-11,15;UBERON:0004208,3.04e-11,15;UBERON:0006555,1.76e-10,16;UBERON:0004819,1.76e-10,16;UBERON:0002417,2.39e-10,60;UBERON:0000916,2.39e-10,60;UBERON:0002113,5.25e-10,26;UBERON:0003918,5.25e-10,26;UBERON:0011143,5.25e-10,26;UBERON:0005095,5.25e-10,26;UBERON:0007687,5.25e-10,26;UBERON:0002119,5.45e-09,4;UBERON:0000489,3.90e-08,31;UBERON:0000991,9.69e-08,21;UBERON:0009196,9.69e-08,21;UBERON:0009117,9.69e-08,21;UBERON:0005564,9.69e-08,21;UBERON:0002118,2.23e-07,5;UBERON:0004176,2.41e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,1.62273696827342,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,1.03366703667732,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0.354668382198357,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.813357600086629,0.207322110030741,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,3.7041661019826,1.47008711385542,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,1.8720341211139,0.445893486866185,0,0,0,0,0,0,106.90792262342,79.5957843479563,21.7694521317811,18.735593944205,27.89957778723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00169191121407,0,0,0,1.42156779497018,0,14.7705294759197,13.9445353376047,17.595246448042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.907170879989041,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.362578348774867,0,0,0,0,0,3.60959690325929,5.69913494572669,2.35304930753057,2.92278449306521,3.27210049567915,0,0.170093705276516,0.863663664408557,0,0.812839312631559,3.01013864312912,0.254876273045038,0.831076008928724,1.79099803777743,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0.316379424718726,1.71567174531442,0,0,0,0,0,0,0,0.606547444719948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,4.32729085561573,0,4.22961015263549,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,2.6593869104025,0.225595660617181,0,0,0,5.2449071063525,7.17393419395292,0,0,0,0,0,0,0.296521128680622,0,0.104421949505455,0,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,15.9259490253718,0.170388021785422,0,0,0,0,0,0,0,0.213574825135389,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0.915360273587694,0,0,0.147855149989634,1.59296767163702,7.19684979461767,3.10525913752519,0,5.3168342911599,3.65221543268214,36.9633718133157,15.6130136989206,3.66183659884195,0.181848659202559,17.0782785697557,0.464033759878494,1.59238355479446,0,0,0,0,0,25.5185493736162,5.74187442323465,0.680117776536817,0.463044948647668,0,0.179088841081487,4.32322026025361,15.7884515696669,1.59020231351293,5.59450710985653,1.01365464391844,2.81865670446741,0,0,0,0,0,0,0,0.245772908753719,1.26787274015176,0,0,0,0,0,0,0,0,0.431299245586727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0.913158720509496,1.72742072974897,8.5995303819669,0.0714765441766563,0,13.01903964123,0,0,0,0,0,0,0,0,0,0,2.17144469965024,0.955538938977433,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4072715192173,0,0,0,0,0.378893491091197,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p@chr20:6035530..6035548,+ | |||
}} |
Revision as of 10:10, 21 January 2014
Short description: | p@chr20:6035530..6035548, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:6035530..6035548, + |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 2.35e-22 | 19 |
mast cell | 6.98e-21 | 5 |
basophil mast progenitor cell | 6.98e-21 | 5 |
kidney tubule cell | 2.37e-17 | 10 |
nephron tubule epithelial cell | 2.37e-17 | 10 |
endocrine cell | 3.25e-16 | 9 |
kidney cell | 3.62e-16 | 17 |
kidney epithelial cell | 3.62e-16 | 17 |
epithelial cell of nephron | 3.04e-11 | 15 |
lining cell | 3.68e-08 | 58 |
barrier cell | 3.68e-08 | 58 |
hepatic stem cell | 5.07e-08 | 2 |
hepatic mesenchymal stem cell | 5.07e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.37e-17 | 10 |
female gonad | 4.24e-13 | 13 |
abdomen element | 7.23e-12 | 54 |
abdominal segment element | 7.23e-12 | 54 |
nephron epithelium | 3.04e-11 | 15 |
renal tubule | 3.04e-11 | 15 |
nephron tubule | 3.04e-11 | 15 |
nephron | 3.04e-11 | 15 |
uriniferous tubule | 3.04e-11 | 15 |
nephrogenic mesenchyme | 3.04e-11 | 15 |
excretory tube | 1.76e-10 | 16 |
kidney epithelium | 1.76e-10 | 16 |
abdominal segment of trunk | 2.39e-10 | 60 |
abdomen | 2.39e-10 | 60 |
kidney | 5.25e-10 | 26 |
kidney mesenchyme | 5.25e-10 | 26 |
upper urinary tract | 5.25e-10 | 26 |
kidney rudiment | 5.25e-10 | 26 |
kidney field | 5.25e-10 | 26 |
left ovary | 5.45e-09 | 4 |
cavitated compound organ | 3.90e-08 | 31 |
gonad | 9.69e-08 | 21 |
indifferent external genitalia | 9.69e-08 | 21 |
indifferent gonad | 9.69e-08 | 21 |
gonad primordium | 9.69e-08 | 21 |
right ovary | 2.23e-07 | 5 |
external genitalia | 2.41e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.51e-25 | 14 |
female reproductive organ cancer | 8.18e-18 | 27 |
reproductive organ cancer | 2.11e-16 | 29 |
cancer | 3.00e-07 | 235 |
disease of cellular proliferation | 5.80e-07 | 239 |