FFCP PHASE1:Hg19::chr20:44637526..44637554,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4318 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7176 | |||
|TSSclassifier=strong | |||
|UniProt=P14780 | |||
|association_with_transcript=0bp_to_ENST00000372330,NM_004994,uc002xqz.2_5end | |||
|coexpression_cluster_id=C433 | |||
|description=CAGE_peak_1_at_MMP9_5end | |||
|id=chr20:44637526..44637554,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.33e-19!76;CL:0002009!8.03e-18!65;CL:0002194!1.21e-16!63;CL:0000576!1.21e-16!63;CL:0000040!1.21e-16!63;CL:0000559!1.21e-16!63;CL:0000557!1.19e-15!71;CL:0000839!6.08e-15!70;CL:0002057!1.97e-14!42;CL:0000763!8.68e-14!112;CL:0000049!8.68e-14!112;CL:0000860!4.71e-13!45;CL:0000738!1.29e-10!140;CL:0000037!1.59e-07!172;CL:0000566!1.59e-07!172;CL:0002032!1.88e-07!165;CL:0000837!1.88e-07!165;CL:0002031!1.93e-07!124;CL:0002087!2.00e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.10e-19;39!CL:0000234;2.10e-19;39!CL:0000860;7.54e-18;33!CL:0002057;7.54e-18;33!CL:0000576;2.96e-10;48!CL:0000766;1.23e-09;69!CL:0000094;1.88e-07;8!CL:0000235;3.57e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.37e-24,72;CL:0002009,8.66e-23,61;CL:0002194,2.79e-21,59;CL:0000576,2.79e-21,59;CL:0000040,2.79e-21,59;CL:0000559,2.79e-21,59;CL:0000473,1.26e-20,48;CL:0000234,1.26e-20,48;CL:0000557,1.15e-19,67;CL:0000839,1.07e-17,66;CL:0000763,8.74e-17,108;CL:0000049,8.74e-17,108;CL:0000860,1.12e-15,42;CL:0002057,1.12e-15,42;CL:0000738,9.73e-10,136;CL:0000094,1.92e-07,8;CL:0000235,3.58e-07,6;CL:0002032,8.77e-07,161;CL:0000837,8.77e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;4.33e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.26e-16!102;UBERON:0003061!4.26e-16!102;UBERON:0002193!1.74e-14!112;UBERON:0002371!7.49e-12!80;UBERON:0007023!4.48e-11!115;UBERON:0001474!5.56e-10!86;UBERON:0002405!9.55e-08!115;UBERON:0004765!2.20e-07!101;UBERON:0001434!2.20e-07!101;UBERON:0000479!5.73e-07!787 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.84e-20,98;UBERON:0003061,4.84e-20,98;UBERON:0002193,7.22e-18,108;UBERON:0002371,5.05e-15,76;UBERON:0002405,5.13e-14,93;UBERON:0001474,2.90e-13,82;UBERON:0004765,1.46e-12,90;UBERON:0001434,4.18e-10,100;UBERON:0007023,7.44e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0.261185628199839,0,0,42.1591848211232,11.605747042052,0,0,242.709377869091,12.0538905604795,9.49403117503585,13.6621183661342,2.83178433576612,0,1.56727360739044,0.572471974262113,3.42186062682211,0,0.840547463227464,0.903106483949403,0.629686250509434,27.5354993794233,25.332740274416,8.05043841243595,36.7768489791571,18.3735610454733,61.7489196978535,0,0.568676929949686,0.587200878669695,7.75593571944628,16.4446446925516,11.5015761479401,17.2414915164742,64.1309458717579,7.98484259665978,8.28769961043519,32.1194552135488,26.6842467306598,38.8156491632493,116.771680198199,92.9119112685311,10.9323109082417,26.1283920659683,18.4456139313096,12.7555901872549,64.5484683583826,50.1078000399065,37.4602255689783,117.076738374816,82.6982422757911,78.9696442316929,217.910809384668,155.998258694966,6.92687730392104,7.57961898962201,5.54092175692502,42.6607580784018,221.847622854236,177.504340963739,13.8186765891209,91.2595107235352,54.2972111762792,13.9241885605675,93.910797176829,67.7229509123493,0.211255286311942,0.212604299965044,0.209658645508376,1.34794357375794,0.901061357049038,2.73233497385036,0,0,0.182664153764634,0,1.63841583378639,0,0.426730222566507,0,1.14950487990897,0.661044872784862,0.954053754535364,0,0.587237189370939,0.382273228125229,0,2.24203425192614,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,2.49861453104692,1.18388626022008,0,0,1.33720097891754,0.579297615531196,0,0,0,0,3.00802746381534,1.30361867064741,38.1737254584528,8.27279279514481,3.02511414925017,0.886917589850256,12.8238787111964,6.7454223881322,59.3801319916844,6.67411997011973,76.91773229616,96.2937447264948,1042.52336842842,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0.550236083880135,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,181.856976061767,504.114343392823,98.9933498363553,0,0,0,0,142.57668964374,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0.570471821544449,0.149448680551801,1.17434498643765,0.161872944368132,0.280901613404497,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,2.11931901159562,0.300091096084402,0,0,0,0,0,0,0.0920498986422993,0.323292113637624,0,0,0,147.651291816759,163.102180113319,30.1144825158454,4.75697453905422,1.85541675650079,6.15827897208447,20.2139057279972,13.3730050964083,0.72995471815166,1.56449532329816,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,2.45976877086227,0.343135620597051,5.5972645558399,26.9764207818287,9.4497234066933,79.8112397266525,0,0,0,1.507095264676,0.117408694235822,0,0.925971025153221,0,0.790204397959275,0,8566.13585878664,12345.1290116856,16015.0077366105,1.87467667973554,43.1714069471069,44.9427058258365,0.53735113621709,0,0.766765358330422,0,0,1.65862492432618,0.144119953416961,0.37872730027914,0.126995788584338,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0.517086863031111,3.57656445851882,13.524844040896,0,0,0,0,0.266422179016099,0,0,0,6.18898750158097,0.355391948742546,0,0,0,2.89921674427965,8220.55133353806,5653.40582116001,10720.9058227122,0,0,0,0,0,0,0.112085143993527,1.18218456121156,0.862510299438069,0.385029108839245,179.644899325282,76.7825137759968,0,8.04078073604874,1.27587750330633,571.4923592717,942.358596492679,991.281908138997,0,0.500170521059677,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,0,0.343143423810856,0.82707210449155,23.7285620900479,2.34800627167578,12.1251028578504,0,2.72151263996712,0.248107807818777,0,0.561320188866147,0,0,0,0,21.2809377447665,22.372777389454,2.46381468041427,0,3.7187321107187,0,8.62177822304125,0.552485933615378,0,0.364182336013434,0,2.25599806453706,4.46688955205606,1.56869953835371,4.38417673959782,28.0767332855049,0,0,0.215915916102139,0,0,0,0,0,0.671624264166535,0.219259876645935,0.522870902049801,0,0,0,5.04900957073839,0,0,60.2978814895981,16.9015663969496,0,0.290012154876366,1.54048617114644,3.37708084397485,6.61615547925747,15.7907759956362,8.70100163485371,18.8350846589583,2.75999310504886,30.7429942571419,28.6363200374008,10.3366297120613,35.7086966420091,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0.359744915166629,0.274537029736055,0.353437207037059,0.404364963146632,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0.578775534266688,13.7737897929793,0,45.5440542206633,0,0.143411352204052,0,0,2.48332744849418,12.6664581178598,0,0,0,102.091661601768,97.864132228225,34.8451151556232,6.3076346520442,68.4503542547256,160.047901884244,539.654496854134,758.087220682966,69.012874855575,44.3489580142578,84.8774308889502,29.7789719322236,60.8816164167567,101.161836546064,50.2229236631447,44.4150098724791,0.213648142254946,0,0,0,0,0,0.159426272728822,0.997896857164083,11.490322207942,4.44514523720154,0,0,0.684704037099577,0.94007937463814,0,6.43308755646092,5.62058262862948,0.403599414382095,0,31.9459970622861,0,0,0,12.3094500103285,0,0,0,0,0,0,207.895106386818,0,0.66866030566487,0,0.71623345421307,3.56357616999166,0,0.994147647766298,0.140669416410513,1.11308705022906,0,0,9.96239941255349,130.682292046233,0,0,0,0,0.0898683511473268,0,0,5.81996093257908,69.4500967806125,0,0,3.24688343566479,0,0,0,11.5999932069567,0,1.01701460117107,0,0,0.291604613383254,0,0.885741385813839,0,0,0.221158519862449,0,0,0,0.139423744278603,3.38581137416707,2.16489906109302,0,0,0,5.42301971544263,5.5874531975136,7.46248686426089,1.02193298195737,0,0,0,0,0,0,0,0.421996129056054,0,0.141353071433941,0,13.9336670350991,2.38835424159016,14.0536933334734,0,0,0,1.07841812769083,12.0386647094818,0,0,0.978323094660449,0,0.394584402849391,60.4953580243319,0,33.5520737827271,0,0,5.98188485436467,3.30991955875499,4.39506085770115,3.58417289318877,0,0.277349346026277,0.173559738335131,1.37189356380129,0.261177619741208,1.57254001417827,2.57979048707425,0.19351266257817,0,0.0821154570532092,2.5217144286989,0,2.03382666702479,7.67434778021805,12.9164497606943,0.126621591911757,0.586654148204409,10.2603289921963,1.70762395791482,0.39961921916426,0,0,0,0,1.11827282008889,0,0.135904206073614,0.313808538937,0.203996435272644,0.288950589901519,1.80126086612937,0.136905378891993,0,0,0,0.837847203816763,0.458320848023367,4.30723814746088,2.79550600698588,6.00916467391199,14.9524876486055,9.74160351057531,0,0,0,0,0,0,18.1200930620779,0,0.408610218334727,3.21506296930038,1.10031549277787,0.415440338029185,489.768161907617,88.9872247741642,0.121499113316049,0,3.23103399926713,6.97646022195475,16.7904535065856,0,0,7.86164859010704,14.5660233480395,0,0,0,0.326587360109409,0,0.246277562248017,0.170388021785422,3.73929902016415,4.25001477666439,25.1763088933221,0.646414781807753,0.52893040697076,0,0,54.2480055843889,5.34494637338864,19.054996545971,241.63285262242,0,0,3.19170628885091,16.8645519044537,18.5510521576798,30.0218665228192,2.62298104567844,0,0,0.854183854313742,0.250381861413,1.14681839138014,0.110929051536852,2.73224172942087,0,0.124980407962107,0,0,0.235265819698172,0,0,4.32838928371935,33.6547166180003,4.43844689202091,0,0,0,0,0,0.15543720058278,0.147855149989634,8.76132219400363,79.1653477407944,75.9235859124909,0.829412415681711,2.12673371646396,2.08698024724694,63.7092262148206,0,3.66183659884195,4.18251916165887,7.51873899297419,2.78420255927096,4.77715066438339,0,0,0.673498977531838,0,1.15571898244382,0,9.65678880271283,0.906823702049089,0.231522474323834,0.97894681802587,0,0.617602894321944,0.438568099157414,3.00371548107998,4.82285095677287,2.53413660979609,0,0,0,0.414775308455192,17.537427795545,48.6285315546909,4.74339643341948,0,0,0,0.39997479170986,17.8175188589215,0,0,0,3.35710818526667,8.70908164046162,0,0,0,0,0.848662649770126,0,2.97445834221605,0,0,0,0,0,0,0.770750701157514,1.41696576325585,0.638535436228605,0,0,0.345786262321089,0,0,0,0,0.366857197043358,0,0,6.21323933454091,0,9.02523940191087,13.3125345344323,4.68908406739856,0,0,0.887136517302272,0.405225507710368,0.781078098613847,0.620060389503552,0.317079050969534,0,38.9263014468599,1.98484471355718,0,1.02209942111676,1.07140367175657,0,1.21393120847326,0.455324382702595,7.45099909366166,0.921871900446234,0,0.40781839786099,0.394636641377094,0.118193840883968,0.111231401892069,1.64835494986079,0.157115589916002,0,12.7842220871329,1.51149313853035,0.47775168788705,2.43020250200632,0,0,0,0,0.414432328326074,0.3414369541879,0,10.3254566116867,0.236664001461131,0.170426809518315,0,0,0,0,0,0,0,1.29485767437579,4.72248911538736,3.4794432940146,2.4285549652957,0,0,0,0,0,0,6.01958433241968,20.326039126868,0,1.22574160876953,0,0.196308467114945,0.297046400327086,6.339835913751,0,93.8899340618737,186.089922579717,0.0999411559249289,0.357107877211315,1.41157948686277,0,6.57302749421866,49.0840333242859,1.00337708206016,0,0.339957450954573,0.436350690340377,52.3736572110246,0.371995018166751,1.84870251452567,0.432626562123789,0,2.73163929909239,0,0.101988829741982,0,0,0.250707539292375,12.8823786971007,0,0,0.20686599172379,94.4626539821345,6.90386851244847,61.3594643442058,61.0194441528283,0,2.48223917284843,3.84022659020617,7.62008617639365,1.02669990325584,135.444978612336,45.1132671919934,6.32054677437425,0.407016343054873,0.426909383510862,1.9307228228694,0,0,1.1001729976458,0,9.98635161278269,253.00115854392,0.961705476909699 | |||
|short_description=p1@MMP9 | |||
}} |
Revision as of 11:39, 21 January 2014
Short description: | p1@MMP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MMP9_5end |
Coexpression cluster: | C433_Macrophage_Monocytederived_Dendritic_Neutrophils_Urothelial_Eosinophils_immature |
Association with transcript: | 0bp_to_ENST00000372330, NM_004994, uc002xqz.2_5end |
EntrezGene: | MMP9 |
HGNC: | 7176 |
UniProt: | P14780 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.37e-24 | 72 |
macrophage dendritic cell progenitor | 8.66e-23 | 61 |
monopoietic cell | 2.79e-21 | 59 |
monocyte | 2.79e-21 | 59 |
monoblast | 2.79e-21 | 59 |
promonocyte | 2.79e-21 | 59 |
defensive cell | 1.26e-20 | 48 |
phagocyte | 1.26e-20 | 48 |
granulocyte monocyte progenitor cell | 1.15e-19 | 67 |
myeloid lineage restricted progenitor cell | 1.07e-17 | 66 |
myeloid cell | 8.74e-17 | 108 |
common myeloid progenitor | 8.74e-17 | 108 |
classical monocyte | 1.12e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.12e-15 | 42 |
leukocyte | 9.73e-10 | 136 |
granulocyte | 1.92e-07 | 8 |
macrophage | 3.58e-07 | 6 |
hematopoietic oligopotent progenitor cell | 8.77e-07 | 161 |
hematopoietic multipotent progenitor cell | 8.77e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.84e-20 | 98 |
blood island | 4.84e-20 | 98 |
hemolymphoid system | 7.22e-18 | 108 |
bone marrow | 5.05e-15 | 76 |
immune system | 5.13e-14 | 93 |
bone element | 2.90e-13 | 82 |
skeletal element | 1.46e-12 | 90 |
skeletal system | 4.18e-10 | 100 |
adult organism | 7.44e-07 | 114 |