FFCP PHASE1:Hg19::chr6:36654158..36654169,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C672 | |||
|description=CAGE_peak_at_chr6:36654158..36654169,+ | |||
|id=chr6:36654158..36654169,+ | |||
|ontology_enrichment_celltype=CL:0002057!8.05e-16!42;CL:0000860!3.27e-15!45;CL:0002194!2.59e-10!63;CL:0000576!2.59e-10!63;CL:0000040!2.59e-10!63;CL:0000559!2.59e-10!63;CL:0000839!1.12e-09!70;CL:0002009!1.49e-09!65;CL:0000557!2.47e-09!71;CL:0000144!3.69e-09!625;CL:0002371!4.20e-09!591;CL:0000766!8.65e-09!76;CL:0000723!1.39e-07!436;CL:0000048!1.52e-07!430;CL:0000034!7.21e-07!444;CL:0000548!7.56e-07!679;CL:0000004!7.56e-07!679;CL:0000255!7.56e-07!679;CL:0002334!8.98e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.95e-46;33!CL:0002057;6.95e-46;33!CL:0000473;2.74e-36;39!CL:0000234;2.74e-36;39!CL:0000576;1.03e-21;48!CL:0000766;4.30e-13;69!CL:0000763;8.13e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.79e-39,48;CL:0000234,1.79e-39,48;CL:0000860,5.39e-39,42;CL:0002057,5.39e-39,42;CL:0002194,3.88e-30,59;CL:0000576,3.88e-30,59;CL:0000040,3.88e-30,59;CL:0000559,3.88e-30,59;CL:0002009,6.19e-29,61;CL:0000839,3.04e-26,66;CL:0000557,9.39e-26,67;CL:0000766,1.66e-23,72;CL:0000763,1.76e-13,108;CL:0000049,1.76e-13,108;CL:0002087,2.86e-12,115;CL:0002031,1.71e-11,120;CL:0000738,2.08e-09,136;CL:0002032,5.09e-07,161;CL:0000837,5.09e-07,161;CL:0000048,5.21e-07,427;CL:0000723,9.28e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;6.11e-30;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.57e-11!167;UBERON:0002371!1.67e-08!80;UBERON:0001474!1.37e-07!86;UBERON:0004765!2.02e-07!101;UBERON:0001434!2.02e-07!101;UBERON:0000926!3.90e-07!448;UBERON:0004120!3.90e-07!448;UBERON:0006603!3.90e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.40e-22,76;UBERON:0001474,1.01e-21,82;UBERON:0004765,3.54e-19,90;UBERON:0002405,2.64e-18,93;UBERON:0002204,4.43e-18,167;UBERON:0001434,5.19e-18,100;UBERON:0002390,1.61e-15,98;UBERON:0003061,1.61e-15,98;UBERON:0002193,8.15e-15,108;UBERON:0003081,1.96e-10,203;UBERON:0000926,1.32e-07,315;UBERON:0004120,1.32e-07,315;UBERON:0006603,1.32e-07,315 | |||
|phase1_expression=0.726713517082227,1.07050261945492,0.563817616383885,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0,1.39560233594486,0.436882744260345,0.263766978228454,0,0,0,1.20538905604795,0,1.95173119516203,0,0,0,0,0,0,0.229240217243854,0,0.314843125254717,0,0.383829398097213,0.154816123316076,0.919421224478927,0.30120591877825,0,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0,1.30858414901608,0.377875943688809,0,1.16214518452842,1.23350366406548,1.54853185447552,3.45230870786581,3.33008918487831,4.25668013799453,1.37898272294647,0,0,2.44715041405386,1.36453075028923,1.34834090667051,0.918251677112708,3.20929027076094,2.55734850319616,1.9791078011203,3.39088217956774,2.98357325372886,2.61188314765726,1.70215567407342,1.24564449799115,3.51748131359441,2.08593167368081,2.6062661364614,1.21079900526674,0.368277635987565,3.16462387440884,0.633765858935825,0.425208599930087,0,0,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0.221729397462564,0.087834785693126,0,0,1.11235332835329,0,0.696518949197069,0.398873881556595,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0.417989933073621,0.516833518338658,0,0.33472061276467,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0.506522046658319,0.264818361626438,0.286836620748814,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.408308342509787,0,0.206651562351531,0,1.23633464639278,0,2.15585442544872,0,0,0,0,1.22595118319608,0,0.226864366320042,0.179389635688862,0.640672166455702,0.211931901159562,0.300091096084402,0.412210116953756,0.257640540045629,0.37223371266318,0,0.194874010322397,0.757301322732344,0.368199594569197,0.161646056818812,0,0.302256294682921,0.169560592310488,0.193260853163297,0.545492241181669,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0.217879444092406,0,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.201057944823262,0.185176890317059,0.651616610620649,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0.358234090811393,0.290633938513962,0,0,0,0.207328115540772,0.720599767084807,0.25248486685276,0,1.14596527667483,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.258543431515556,0,0.845302752556,1.06375246633948,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,1.74306691720059,0.399891964728228,1.2162378064119,0,2.10833939483032,0,0,1.42636905040718,0.289562613335158,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0.207970861530807,0.535286966391485,0.630809660135739,0.117141414992713,0,6.82222512167955,1.03473071292505,0,0.184369168541703,0.434418072340414,0.195801157462741,1.02943027143257,0,0.215714200818617,0.213455115606889,0,1.66435439510497,0,1.24053903909388,0.306923946576125,2.24528075546459,1.02511319404561,2.55853624533352,0.160853921143607,2.96836132889982,0.154209693802656,0.710246901252508,0.164254312027618,0.519254429183621,0.232420756919918,0,0.40101294060657,1.84161977871793,0,0.546273504020151,0.524497659837696,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0.769350375349168,0,0,0.103041011647722,0,0,0,1.30012049207304,0,0.193341436584244,0,0,0,0.214840489736547,0,0.170453254832202,0.0890320356467374,1.32227932288782,0,0,0.6069466851333,2.78907329578371,0.31481234683064,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.286249773483982,0.744316738719335,0,0.953150969619124,0.511795582622668,1.28381696410176,0.636406495851874,0,0.359744915166629,0.274537029736055,0.235624804691373,0.202182481573316,1.58510321173008,0,0,0.731140468893853,0,0,1.27264888758341,1.13008116620243,0.551365343546124,0.66343897524122,0.438450885253763,0.578775534266688,0.655894752046633,0.811641507850816,0,0,0,0,0.35667105148125,0.354761064070598,0.633322905892992,0.329294892959902,0,0,0.288666338176536,0,2.17781969722645,0,0,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,1.24415835064723,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0.366390373607449,0,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0.611030144933625,0,0.123563938946503,0.313265848516366,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0.661983911750998,0,0,0,0.138674673013139,0.347119476670262,0,0,0.17472666824203,0,0.19351266257817,0.073089317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| |||
|short_description=p@chr6:36654158..36654169,+ | |||
}} |
Revision as of 11:40, 22 January 2014
Short description: | p@chr6:36654158..36654169, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:36654158..36654169, + |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.79e-39 | 48 |
phagocyte | 1.79e-39 | 48 |
classical monocyte | 5.39e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.39e-39 | 42 |
monopoietic cell | 3.88e-30 | 59 |
monocyte | 3.88e-30 | 59 |
monoblast | 3.88e-30 | 59 |
promonocyte | 3.88e-30 | 59 |
macrophage dendritic cell progenitor | 6.19e-29 | 61 |
myeloid lineage restricted progenitor cell | 3.04e-26 | 66 |
granulocyte monocyte progenitor cell | 9.39e-26 | 67 |
myeloid leukocyte | 1.66e-23 | 72 |
myeloid cell | 1.76e-13 | 108 |
common myeloid progenitor | 1.76e-13 | 108 |
nongranular leukocyte | 2.86e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.71e-11 | 120 |
leukocyte | 2.08e-09 | 136 |
hematopoietic oligopotent progenitor cell | 5.09e-07 | 161 |
hematopoietic multipotent progenitor cell | 5.09e-07 | 161 |
multi fate stem cell | 5.21e-07 | 427 |
somatic stem cell | 9.28e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.40e-22 | 76 |
bone element | 1.01e-21 | 82 |
skeletal element | 3.54e-19 | 90 |
immune system | 2.64e-18 | 93 |
musculoskeletal system | 4.43e-18 | 167 |
skeletal system | 5.19e-18 | 100 |
hematopoietic system | 1.61e-15 | 98 |
blood island | 1.61e-15 | 98 |
hemolymphoid system | 8.15e-15 | 108 |
lateral plate mesoderm | 1.96e-10 | 203 |
mesoderm | 1.32e-07 | 315 |
mesoderm-derived structure | 1.32e-07 | 315 |
presumptive mesoderm | 1.32e-07 | 315 |