FFCP PHASE1:Hg19::chr6:105627765..105627917,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64208 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17649 | |||
|TSSclassifier=strong | |||
|UniProt=Q9HBV1 | |||
|association_with_transcript=0bp_to_ENST00000474760,NM_022361,uc003prb.2_5end | |||
|description=CAGE_peak_1_at_POPDC3_5end | |||
|id=chr6:105627765..105627917,- | |||
|ontology_enrichment_celltype=CL:0000055!4.55e-24!180;CL:0000057!4.91e-11!75;CL:0000680!3.13e-08!57;CL:0000056!3.13e-08!57;CL:0000355!3.13e-08!57;CL:0000187!3.36e-07!54;CL:0002321!5.18e-07!248;CL:0000220!5.46e-07!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.70e-11,76;CL:0000680,3.63e-08,58;CL:0000056,3.63e-08,58;CL:0000355,3.63e-08,58;CL:0000187,3.98e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;9.15e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.30e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.13e-19!365;UBERON:0000914!4.30e-15!83;UBERON:0002329!4.30e-15!83;UBERON:0003077!4.30e-15!83;UBERON:0003059!4.30e-15!83;UBERON:0007282!4.30e-15!83;UBERON:0009618!4.30e-15!83;UBERON:0007285!4.30e-15!83;UBERON:0000486!4.03e-14!82;UBERON:0004290!4.66e-13!70;UBERON:0000483!1.49e-11!309;UBERON:0000119!3.44e-11!312;UBERON:0003102!5.85e-11!95;UBERON:0000481!5.97e-11!347;UBERON:0001134!3.55e-10!61;UBERON:0002036!3.55e-10!61;UBERON:0003082!3.55e-10!61;UBERON:0002385!3.07e-09!63;UBERON:0001015!3.07e-09!63;UBERON:0000383!3.07e-09!63;UBERON:0004121!7.89e-09!169;UBERON:0000468!1.61e-08!659;UBERON:0000480!2.01e-08!626;UBERON:0002100!2.48e-08!216;UBERON:0000033!2.65e-08!123;UBERON:0000467!3.43e-08!625;UBERON:0000924!6.59e-08!173;UBERON:0006601!6.59e-08!173;UBERON:0000153!1.80e-07!129;UBERON:0007811!1.80e-07!129;UBERON:0004111!3.12e-07!241;UBERON:0002199!8.46e-07!45;UBERON:0002416!8.46e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.44e-08;16!UBERON:0002036;1.44e-08;16!UBERON:0002385;2.06e-08;31!UBERON:0001015;2.06e-08;31!UBERON:0000383;2.06e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,8.69e-14,83;UBERON:0003077,3.47e-13,72;UBERON:0007285,3.47e-13,72;UBERON:0002329,4.69e-13,71;UBERON:0003059,4.69e-13,71;UBERON:0007282,4.69e-13,71;UBERON:0004290,4.69e-13,71;UBERON:0009618,4.69e-13,71;UBERON:0007524,6.30e-13,73;UBERON:0003102,3.24e-11,99;UBERON:0007503,6.85e-11,78;UBERON:0000483,1.09e-10,306;UBERON:0000119,3.74e-10,309;UBERON:0001134,3.96e-10,62;UBERON:0002036,3.96e-10,62;UBERON:0003082,3.96e-10,62;UBERON:0010314,1.36e-09,132;UBERON:0002385,4.11e-09,64;UBERON:0001015,4.11e-09,64;UBERON:0000383,4.11e-09,64;UBERON:0002199,1.31e-07,46;UBERON:0002416,1.31e-07,46;UBERON:0004121,1.56e-07,171;UBERON:0000924,1.56e-07,171;UBERON:0006601,1.56e-07,171;UBERON:0002097,3.29e-07,41 | |||
|phase1_expression=14.352591962374,12.631930909568,10.2896714990059,14.0102617694383,9.83314407740033,2.61701557230111,0,15.1612769622439,7.05201196139564,4.42321085702716,0.697801167972428,0,0.527533956456907,10.520140001604,7.95353701746998,20.1697543935533,13.2592796165275,18.9880623500717,20.9811103479918,1.60057375499824,1.83600622119828,4.70182082217132,2.28988789704845,1.09499540058307,0.502170558379211,0,0,0,0,0,0,6.43594857135249,10.5422071572388,12.201882335504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,3.35350429851818,1.91793842765295,36.1439152384566,25.5682334424304,31.1420015765771,15.905718941022,16.5455855902896,2.07976597760949,1.10864698731282,1.14185221401064,3.20898734969396,4.00724817121796,2.59549109949101,0,0,0,0,0,0,1.78886166630035,2.58070378531837,0.694281003215189,1.69592382577203,0.419499436209906,1.6507082516404,0.626984899610432,1.55050055501597,7.47109151642091,4.68608857870538,4.83395180530976,8.36299316290364,3.1728067481262,2.20597848207521,0,1.69669483739752,1.79623498100936,3.82879033643296,4.5994991239765,7.59412527654503,2.93122790288652,0,0,8.72188104285069,6.95760732373446,6.71141711822273,10.9899620074972,5.44989579422746,13.8320669057359,6.16745360156538,5.33744978648525,11.3467072271894,6.22422070799533,3.77189881795127,3.59616186849609,0.454072282934794,0,2.81185718200556,11.8620829195522,17.6846264678779,22.2678534022184,25.0135482111219,14.7304379375,17.1349984176743,18.1697212416855,4.29920110591188,27.5879835739294,22.572054288359,27.6938960791984,7.28129089550421,6.46756327634615,12.2885363186468,9.25877047052535,17.4550392755035,26.3386572528503,24.5190236639216,30.6485640169457,3.85669422744072,5.56107870635472,32.4607231004222,26.2795557437857,7.50227740211006,27.3089202481863,4.63752972082133,25.1257756047646,6.07594796068558,29.8157235793268,3.28163906517349,24.301173241567,7.27407255684654,10.6502877754984,34.15496129917,9.32583257707682,20.4856504353095,13.9100521501326,16.0610573417842,3.90315859614705,6.09636934278832,5.34492137199785,3.00617059544574,5.80337957013945,2.91981887260664,35.9833924358577,18.0107462694008,33.1523811245953,29.7195473940467,47.6440457901926,0.709840800239063,0.168584690078102,0.241011029883482,0.330881918197182,0.435758888184812,0.474541238222193,0.134831308160164,0.588664395376038,1.15424147083917,0,4.20725321410337,1.6462960453256,1.47008711385542,0,0,0,0,0.491953754172454,4.28919525746314,10.3165268284108,0,3.61904300681871,3.24059558054854,0.325808305310325,12.4792174233549,4.3299402607582,6.4921026786043,4.10930429825376,11.693682268647,5.55582615091933,5.32711626256875,0,0,0.246217006087397,2.10603838625314,0.297262324577456,17.8094284574876,11.5907668457213,3.1190521393325,23.4643329481463,6.39394664730716,24.1531087874083,0,0,0,0,0,30.9234745202863,13.3695948945397,8.20522130470329,6.84289784090821,22.2107384239179,28.2322474373282,28.8684696956884,0.448524337381443,0.43596006883328,1.9067954313447,5.17086863031111,0,26.204385329236,9.57377219705534,14.5610411675913,3.85811061393213,4.25547396069835,5.59486575933809,1.85871391755592,0.542621605391443,4.93944202068461,32.8993546136672,3.19852753868291,5.543663110534,26.225225804184,22.6598699236076,14.3961107302162,0,0,0,10.0642439306465,3.44585807502342,45.6438096130299,18.9663511734529,24.8626350285964,36.5284365009387,0,0,0,0,0.76228387266739,0,0,1.00509759200609,1.27587750330633,0,0,0,4.41689370188904,10.5035809422532,7.32415563989286,14.3499894456257,12.3116002270042,15.4548366733256,5.03708084468667,14.7463588866582,11.3703752027992,9.31257641632544,5.31380478828349,14.0120568091694,13.8144947004252,1.37060810223918,3.0882908142977,0,0,0,0,1.66435439510497,0.907170879989041,15.3826840847642,8.90079445070762,18.5235662325829,7.56020980608636,23.0268262080017,10.2946509531909,13.3576259800492,23.285663764201,23.9708329172722,25.0487825842118,25.4434670299974,17.5477671474538,0.846016147141356,19.4491276194186,12.6150954842178,7.80738247519326,10.925470080403,13.7680635707395,1.35359883872224,2.23344477602803,1.56869953835371,1.46139224653261,4.3276167846079,0,1.70093705276516,5.18198198645135,0,4.33514300070165,3.01013864312912,0.254876273045038,0,5.37299411333228,0,0,5.64190275256056,0.328014645699706,5.20605431462885,1.03041011647722,15.8415174135734,16.419390484197,9.76251414593493,7.80072295243825,4.82051789532479,38.1849337253882,16.9453478826109,13.9688344000778,18.194427567958,15.0388342815583,14.3566526975086,22.1589231281862,16.6489906659399,5.78497203763423,11.1470239071762,3.70076866234294,7.28336022159959,19.9883586197833,4.7221852024596,22.3051926451392,2.46426864140871,9.04920251538937,21.7483248018768,15.5672344047293,3.2918723950658,4.46590043231601,6.64396791909324,16.0129362896013,6.14154699147201,1.28381696410176,11.4553169253337,9.41938368239076,9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| |||
|short_description=p1@POPDC3 | |||
}} |
Revision as of 13:10, 22 January 2014
Short description: | p1@POPDC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_POPDC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000474760, NM_022361, uc003prb.2_5end |
EntrezGene: | POPDC3 |
HGNC: | 17649 |
UniProt: | Q9HBV1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.70e-11 | 76 |
muscle precursor cell | 3.63e-08 | 58 |
myoblast | 3.63e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.63e-08 | 58 |
muscle cell | 3.98e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 8.69e-14 | 83 |
paraxial mesoderm | 3.47e-13 | 72 |
presumptive paraxial mesoderm | 3.47e-13 | 72 |
somite | 4.69e-13 | 71 |
presomitic mesoderm | 4.69e-13 | 71 |
presumptive segmental plate | 4.69e-13 | 71 |
dermomyotome | 4.69e-13 | 71 |
trunk paraxial mesoderm | 4.69e-13 | 71 |
dense mesenchyme tissue | 6.30e-13 | 73 |
surface structure | 3.24e-11 | 99 |
epithelial vesicle | 6.85e-11 | 78 |
epithelium | 1.09e-10 | 306 |
cell layer | 3.74e-10 | 309 |
skeletal muscle tissue | 3.96e-10 | 62 |
striated muscle tissue | 3.96e-10 | 62 |
myotome | 3.96e-10 | 62 |
structure with developmental contribution from neural crest | 1.36e-09 | 132 |
muscle tissue | 4.11e-09 | 64 |
musculature | 4.11e-09 | 64 |
musculature of body | 4.11e-09 | 64 |
integument | 1.31e-07 | 46 |
integumental system | 1.31e-07 | 46 |
ectoderm-derived structure | 1.56e-07 | 171 |
ectoderm | 1.56e-07 | 171 |
presumptive ectoderm | 1.56e-07 | 171 |
skin of body | 3.29e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.30e-07 | 14 |