UBERON:0002616: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676 | ||
|anatomical_img_id=FMA:55676 | |||
| | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A multi-tissue structure that is part of a brain [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002616 | |||
|is_a=UBERON:0000073 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=regional part of brain | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="anatomical structure of brain" EXACT [OBOL:automatic];;"biological structure of brain" EXACT [OBOL:automatic];;"brain anatomical structure" EXACT [OBOL:automatic];;"brain biological structure" EXACT [OBOL:automatic];;"brain part" EXACT [];;"neuraxis segment" EXACT [FMA:55676];;"segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167] | ||
|union_of= | |||
|xref=FMA:55676;;ncithesaurus:Brain_Part;;NIF_GrossAnatomy:birnlex_1167;;SCTID:384763002 | |||
}} | }} | ||
Latest revision as of 17:34, 12 September 2014
| Name: | regional part of brain | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A multi-tissue structure that is part of a brain [Obol]." [OBOL:automatic] | |
| Xrefs: |
| |
| Synonyms: |
"anatomical structure of brain" EXACT [OBOL:automatic] "biological structure of brain" EXACT [OBOL:automatic] "brain anatomical structure" EXACT [OBOL:automatic] "brain biological structure" EXACT [OBOL:automatic] "brain part" EXACT [] "neuraxis segment" EXACT [FMA:55676] "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167] | |
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000073(regional part of nervous system),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| is a: | UBERON:0000369 (corpus striatum),UBERON:0001890 (forebrain),UBERON:0001891 (midbrain),UBERON:0002028 (hindbrain),UBERON:0002275 (reticular formation),UBERON:0002298 (brainstem),UBERON:0002680 (regional part of metencephalon),UBERON:0002780 (regional part of forebrain),UBERON:0002950 (regional part of midbrain),UBERON:0004684 (raphe nuclei),UBERON:0005408 (circumventricular organ),UBERON:0010009 (aggregate regional part of brain),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon),UBERON:0015827 (brainstem reticular formation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10033-101E6 (pons, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10035-101E8 (paracentral gyrus, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10038-101F2 (medulla oblongata, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002616 (regional part of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
