FFCP PHASE1:Hg19::chr11:65688558..65688573,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:65688558..65688573,- | |||
|description=CAGE_peak_at_chr11:65688558..65688573,- | |description=CAGE_peak_at_chr11:65688558..65688573,- | ||
|id=chr11:65688558..65688573,- | |id=chr11:65688558..65688573,- | ||
|ontology_enrichment_celltype=CL:0000057!5.09e-31!75;CL:0000055!9.75e-21!180;CL:0002620!4.99e-16!23;CL:0002556!2.00e-08!6;CL:0002552!2.96e-08!5;CL:0000723!8.58e-08!436;CL:0000034!3.09e-07!444;CL:0000048!4.59e-07!430;CL:1000306!8.22e-07!4;CL:0002547!8.22e-07!4 | |ontology_enrichment_celltype=CL:0000057!5.09e-31!75;CL:0000055!9.75e-21!180;CL:0002620!4.99e-16!23;CL:0002556!2.00e-08!6;CL:0002552!2.96e-08!5;CL:0000723!8.58e-08!436;CL:0000034!3.09e-07!444;CL:0000048!4.59e-07!430;CL:1000306!8.22e-07!4;CL:0002547!8.22e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000135;2.12e-15;3!CL:0000388;2.12e-15;3!CL:0002582;3.26e-14;3!CL:1000306;4.04e-11;4!CL:0002547;4.04e-11;4!CL:0002552;4.25e-09;5!CL:0000057;1.76e-07;73!CL:0000214;2.08e-07;3!CL:0002556;3.45e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.12e-24,76;CL:0000135,1.93e-15,3;CL:0000388,1.93e-15,3;CL:0002582,4.20e-14,3;CL:1000306,3.53e-11,4;CL:0002547,3.53e-11,4;CL:0002552,4.56e-09,5;CL:0000214,2.02e-07,3;CL:0002556,3.45e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.22e-15;3!DOID:127;2.22e-15;3!DOID:0060072;1.19e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.93e-15,3;DOID:127,1.93e-15,3;DOID:0060072,1.07e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.24e-18!95;UBERON:0002199!4.75e-12!45;UBERON:0002416!4.75e-12!45;UBERON:0002097!1.19e-11!40;UBERON:0001758!2.00e-08!6;UBERON:0003672!2.00e-08!6;UBERON:0000415!8.22e-07!4;UBERON:0007240!8.22e-07!4;UBERON:0005742!8.22e-07!4;UBERON:0005734!8.22e-07!4;UBERON:0004664!8.22e-07!4;UBERON:0004663!8.22e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;2.12e-15;3!UBERON:0000043;2.12e-15;3!UBERON:0007845;2.12e-15;3!UBERON:0004797;4.04e-11;4!UBERON:0000415;4.04e-11;4!UBERON:0007240;4.04e-11;4!UBERON:0005742;4.04e-11;4!UBERON:0005734;4.04e-11;4!UBERON:0004664;4.04e-11;4!UBERON:0004663;4.04e-11;4!UBERON:0006915;2.08e-07;3!UBERON:0007616;2.08e-07;3!UBERON:0002217;2.08e-07;3!UBERON:0002018;2.08e-07;3!UBERON:0001758;3.45e-07;6!UBERON:0003672;3.45e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.93e-15,3;UBERON:0000043,1.93e-15,3;UBERON:0007845,1.93e-15,3;UBERON:0000415,3.53e-11,4;UBERON:0007240,3.53e-11,4;UBERON:0005742,3.53e-11,4;UBERON:0005734,3.53e-11,4;UBERON:0004664,3.53e-11,4;UBERON:0004663,3.53e-11,4;UBERON:0006915,2.02e-07,3;UBERON:0007616,2.02e-07,3;UBERON:0002217,2.02e-07,3;UBERON:0002018,2.02e-07,3;UBERON:0001758,3.45e-07,6;UBERON:0003672,3.45e-07,6;UBERON:0003102,4.87e-07,99 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.869079113764942,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.25326102332916,3.17782033951725,1.72101972449288,2.12801029319014,0,0,0,0.622422070799533,0,0,0,0,0,0.312160076830321,0,3.73621701379503,0,0,0.280901613404497,2.44985005505872,0.368502951935304,1.23990937410919,7.12801714369232,0.989067717114227,0.910161361938026,0.718618141816238,0.168336113954066,0.125118519871964,1.10825646193673,0.877955241761676,1.22595118319608,1.95309476578576,0,0.717558542755448,0,1.05965950579781,3.30100205692843,0.618315175430633,0.772921620136887,0.18611685633159,1.35021065793013,0.194874010322397,2.27190396819703,1.19664868234989,0.80823028409406,0.355009592516614,0.403008392910561,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.402115889646523,0.0925884451585296,0.651616610620649,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,0,1.42636905040718,3.90909528002464,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.178428988797162,0,1.63997980989798,0.300946099727719,0,0,0,0,0.868836144680828,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0.160853921143607,0,0.462629081407967,1.24293207719189,1.64254312027618,1.03850885836724,2.20799719073923,0,0.200506470303285,0.0920809889358963,0.229628896329213,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0.192190067365106,0.127612712494584,0,1.39453664789186,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0.42793898803392,0.95460974377781,0,0,0,0,0.808729926293264,3.17020642346017,0.421258456238981,0,1.70599442741899,0,0.272999822815972,0,1.13008116620243,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0,0,0,0.709522128141196,2.53329162357197,4.28083360847872,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,2.48831670129446,0,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.661983911750998,0,1.19472429772959,0,0.277349346026277,0,0.391969589657511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36677789121976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,4.3439968140297,2.5926644736038,5.22539776175055,0,0.574647645245373,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0.467426619694449,1.10961172300523,0.378806010550178,0,3.55924488638614,0.457680136793847,0.604923695052956,0.310874401165561,0,0.159296767163702,0,0,0.829412415681711,0,0,0.150257608997218,0,0,0,0,0,0.796191777397232,0,1.37358282073117,0.673498977531838,0,0,0.214441591374926,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0.38582807654183,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795664888465099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97596014533401,4.15958065768276,6.05677186973305,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.426909383510862,1.9307228228694,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.869079113764942,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.25326102332916,3.17782033951725,1.72101972449288,2.12801029319014,0,0,0,0.622422070799533,0,0,0,0,0,0.312160076830321,0,3.73621701379503,0,0,0.280901613404497,2.44985005505872,0.368502951935304,1.23990937410919,7.12801714369232,0.989067717114227,0.910161361938026,0.718618141816238,0.168336113954066,0.125118519871964,1.10825646193673,0.877955241761676,1.22595118319608,1.95309476578576,0,0.717558542755448,0,1.05965950579781,3.30100205692843,0.618315175430633,0.772921620136887,0.18611685633159,1.35021065793013,0.194874010322397,2.27190396819703,1.19664868234989,0.80823028409406,0.355009592516614,0.403008392910561,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.402115889646523,0.0925884451585296,0.651616610620649,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,0,1.42636905040718,3.90909528002464,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.178428988797162,0,1.63997980989798,0.300946099727719,0,0,0,0,0.868836144680828,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0.160853921143607,0,0.462629081407967,1.24293207719189,1.64254312027618,1.03850885836724,2.20799719073923,0,0.200506470303285,0.0920809889358963,0.229628896329213,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0.192190067365106,0.127612712494584,0,1.39453664789186,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0.42793898803392,0.95460974377781,0,0,0,0,0.808729926293264,3.17020642346017,0.421258456238981,0,1.70599442741899,0,0.272999822815972,0,1.13008116620243,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0,0,0,0.709522128141196,2.53329162357197,4.28083360847872,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,2.48831670129446,0,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.661983911750998,0,1.19472429772959,0,0.277349346026277,0,0.391969589657511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36677789121976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,4.3439968140297,2.5926644736038,5.22539776175055,0,0.574647645245373,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0.467426619694449,1.10961172300523,0.378806010550178,0,3.55924488638614,0.457680136793847,0.604923695052956,0.310874401165561,0,0.159296767163702,0,0,0.829412415681711,0,0,0.150257608997218,0,0,0,0,0,0.796191777397232,0,1.37358282073117,0.673498977531838,0,0,0.214441591374926,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0.38582807654183,0,0,0,0.607719912354764,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795664888465099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97596014533401,4.15958065768276,6.05677186973305,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.426909383510862,1.9307228228694,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr11:65688558..65688573,- | |short_description=p@chr11:65688558..65688573,- | ||
}} | }} |
Latest revision as of 00:54, 24 July 2015
Short description: | p@chr11:65688558..65688573, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:65688558..65688573, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.12e-24 | 76 |
fibrocyte | 1.93e-15 | 3 |
tendon cell | 1.93e-15 | 3 |
visceral preadipocyte | 4.20e-14 | 3 |
fibroblast of tunica adventitia of artery | 3.53e-11 | 4 |
fibroblast of the aortic adventitia | 3.53e-11 | 4 |
fibroblast of gingiva | 4.56e-09 | 5 |
synovial cell | 2.02e-07 | 3 |
fibroblast of periodontium | 3.45e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.93e-15 | 3 |
tendon | 1.93e-15 | 3 |
regular connective tissue | 1.93e-15 | 3 |
artery wall | 3.53e-11 | 4 |
tunica adventitia of artery | 3.53e-11 | 4 |
adventitia | 3.53e-11 | 4 |
tunica adventitia of blood vessel | 3.53e-11 | 4 |
aorta tunica adventitia | 3.53e-11 | 4 |
aorta wall | 3.53e-11 | 4 |
stratified squamous epithelium | 2.02e-07 | 3 |
layer of synovial tissue | 2.02e-07 | 3 |
synovial joint | 2.02e-07 | 3 |
synovial membrane of synovial joint | 2.02e-07 | 3 |
periodontium | 3.45e-07 | 6 |
dentition | 3.45e-07 | 6 |
surface structure | 4.87e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.93e-15 | 3 |
leiomyoma | 1.93e-15 | 3 |
benign neoplasm | 1.07e-11 | 4 |