FFCP PHASE1:Hg19::chr12:105037910..105037939,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:105037910..105037939,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_at_chr12:105037910..105037939,+ | |description=CAGE_peak_at_chr12:105037910..105037939,+ | ||
|id=chr12:105037910..105037939,+ | |id=chr12:105037910..105037939,+ | ||
|ontology_enrichment_celltype=CL:0000766!6.12e-74!76;CL:0002194!4.08e-69!63;CL:0000576!4.08e-69!63;CL:0000040!4.08e-69!63;CL:0000559!4.08e-69!63;CL:0002009!1.30e-66!65;CL:0002057!3.97e-63!42;CL:0000839!5.66e-61!70;CL:0000557!6.12e-60!71;CL:0000860!3.33e-58!45;CL:0000763!3.78e-54!112;CL:0000049!3.78e-54!112;CL:0000738!4.17e-42!140;CL:0000037!8.81e-36!172;CL:0000566!8.81e-36!172;CL:0002087!1.24e-35!119;CL:0002032!2.19e-33!165;CL:0000837!2.19e-33!165;CL:0000988!5.93e-33!182;CL:0002031!1.85e-30!124;CL:0002393!3.49e-16!9;CL:0002397!3.49e-16!9;CL:0000094!1.34e-11!8;CL:0000134!2.42e-09!358;CL:0000775!3.24e-09!3;CL:0002320!6.80e-09!365;CL:0000081!3.47e-08!11;CL:0000875!3.55e-08!3;CL:0002396!3.55e-08!3;CL:0002619!7.30e-08!3;CL:0000219!2.48e-07!390 | |ontology_enrichment_celltype=CL:0000766!6.12e-74!76;CL:0002194!4.08e-69!63;CL:0000576!4.08e-69!63;CL:0000040!4.08e-69!63;CL:0000559!4.08e-69!63;CL:0002009!1.30e-66!65;CL:0002057!3.97e-63!42;CL:0000839!5.66e-61!70;CL:0000557!6.12e-60!71;CL:0000860!3.33e-58!45;CL:0000763!3.78e-54!112;CL:0000049!3.78e-54!112;CL:0000738!4.17e-42!140;CL:0000037!8.81e-36!172;CL:0000566!8.81e-36!172;CL:0002087!1.24e-35!119;CL:0002032!2.19e-33!165;CL:0000837!2.19e-33!165;CL:0000988!5.93e-33!182;CL:0002031!1.85e-30!124;CL:0002393!3.49e-16!9;CL:0002397!3.49e-16!9;CL:0000094!1.34e-11!8;CL:0000134!2.42e-09!358;CL:0000775!3.24e-09!3;CL:0002320!6.80e-09!365;CL:0000081!3.47e-08!11;CL:0000875!3.55e-08!3;CL:0002396!3.55e-08!3;CL:0002619!7.30e-08!3;CL:0000219!2.48e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.47e-30;33!CL:0002057;8.47e-30;33!CL:0000576;3.94e-26;48!CL:0000473;4.85e-26;39!CL:0000234;4.85e-26;39!CL:0000775;3.26e-20;3!CL:0000766;3.26e-20;69!CL:0000094;5.16e-20;8!CL:0000081;1.69e-14;11!CL:0000771;1.07e-13;2!CL:0000875;7.30e-09;3!CL:0002396;7.30e-09;3!CL:0000763;1.89e-08;100!CL:0000738;1.72e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.28e-43,72;CL:0000860,3.09e-42,42;CL:0002057,3.09e-42,42;CL:0000473,8.83e-41,48;CL:0000234,8.83e-41,48;CL:0002194,7.59e-32,59;CL:0000576,7.59e-32,59;CL:0000040,7.59e-32,59;CL:0000559,7.59e-32,59;CL:0002009,1.08e-30,61;CL:0000839,4.13e-28,66;CL:0000557,1.22e-27,67;CL:0000763,3.59e-27,108;CL:0000049,3.59e-27,108;CL:0000738,1.24e-20,136;CL:0000775,3.26e-20,3;CL:0000094,5.06e-20,8;CL:0002032,1.06e-16,161;CL:0000837,1.06e-16,161;CL:0000037,8.27e-16,168;CL:0000988,9.16e-15,177;CL:0002087,1.38e-14,115;CL:0000081,1.67e-14,11;CL:0002031,8.01e-14,120;CL:0000771,1.04e-13,2;CL:0002393,9.22e-11,9;CL:0002397,9.22e-11,9;CL:0000875,7.01e-09,3;CL:0002396,7.01e-09,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.61e-33;42!CL:0000049;2.86e-10;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.16e-66!102;UBERON:0003061!2.16e-66!102;UBERON:0002193!1.36e-61!112;UBERON:0002371!8.60e-52!80;UBERON:0001474!2.66e-47!86;UBERON:0004765!2.94e-40!101;UBERON:0001434!2.94e-40!101;UBERON:0002405!2.44e-37!115;UBERON:0003081!1.77e-25!216;UBERON:0002204!2.27e-20!167;UBERON:0000178!1.14e-15!15;UBERON:0000179!1.14e-15!15;UBERON:0000463!1.14e-15!15;UBERON:0002384!8.30e-09!375;UBERON:0000926!6.83e-07!448;UBERON:0004120!6.83e-07!448;UBERON:0006603!6.83e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.03e-25;15!UBERON:0000179;1.03e-25;15!UBERON:0000463;1.03e-25;15!UBERON:0002390;7.47e-11;32!UBERON:0002193;4.66e-08;42!UBERON:0000029;3.84e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.16e-39,98;UBERON:0003061,2.16e-39,98;UBERON:0002193,3.33e-38,108;UBERON:0000178,1.12e-25,15;UBERON:0000179,1.12e-25,15;UBERON:0000463,1.12e-25,15;UBERON:0002371,5.94e-24,76;UBERON:0001474,6.14e-22,82;UBERON:0002405,3.75e-21,93;UBERON:0004765,1.15e-19,90;UBERON:0001434,2.48e-17,100;UBERON:0003081,1.95e-16,203;UBERON:0002204,7.03e-09,167;UBERON:0000926,9.95e-09,315;UBERON:0004120,9.95e-09,315;UBERON:0006603,9.95e-09,315;UBERON:0000029,3.84e-07,1 | |||
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| ||
|short_description=p@chr12:105037910..105037939,+ | |short_description=p@chr12:105037910..105037939,+ | ||
}} | }} |
Latest revision as of 04:20, 24 July 2015
Short description: | p@chr12:105037910..105037939, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105037910..105037939, + |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.28e-43 | 72 |
classical monocyte | 3.09e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.09e-42 | 42 |
defensive cell | 8.83e-41 | 48 |
phagocyte | 8.83e-41 | 48 |
monopoietic cell | 7.59e-32 | 59 |
monocyte | 7.59e-32 | 59 |
monoblast | 7.59e-32 | 59 |
promonocyte | 7.59e-32 | 59 |
macrophage dendritic cell progenitor | 1.08e-30 | 61 |
myeloid lineage restricted progenitor cell | 4.13e-28 | 66 |
granulocyte monocyte progenitor cell | 1.22e-27 | 67 |
myeloid cell | 3.59e-27 | 108 |
common myeloid progenitor | 3.59e-27 | 108 |
leukocyte | 1.24e-20 | 136 |
neutrophil | 3.26e-20 | 3 |
granulocyte | 5.06e-20 | 8 |
hematopoietic oligopotent progenitor cell | 1.06e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.06e-16 | 161 |
hematopoietic stem cell | 8.27e-16 | 168 |
hematopoietic cell | 9.16e-15 | 177 |
nongranular leukocyte | 1.38e-14 | 115 |
blood cell | 1.67e-14 | 11 |
hematopoietic lineage restricted progenitor cell | 8.01e-14 | 120 |
eosinophil | 1.04e-13 | 2 |
intermediate monocyte | 9.22e-11 | 9 |
CD14-positive, CD16-positive monocyte | 9.22e-11 | 9 |
non-classical monocyte | 7.01e-09 | 3 |
CD14-low, CD16-positive monocyte | 7.01e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.16e-39 | 98 |
blood island | 2.16e-39 | 98 |
hemolymphoid system | 3.33e-38 | 108 |
blood | 1.12e-25 | 15 |
haemolymphatic fluid | 1.12e-25 | 15 |
organism substance | 1.12e-25 | 15 |
bone marrow | 5.94e-24 | 76 |
bone element | 6.14e-22 | 82 |
immune system | 3.75e-21 | 93 |
skeletal element | 1.15e-19 | 90 |
skeletal system | 2.48e-17 | 100 |
lateral plate mesoderm | 1.95e-16 | 203 |
musculoskeletal system | 7.03e-09 | 167 |
mesoderm | 9.95e-09 | 315 |
mesoderm-derived structure | 9.95e-09 | 315 |
presumptive mesoderm | 9.95e-09 | 315 |
lymph node | 3.84e-07 | 1 |