FFCP PHASE1:Hg19::chr12:25108523..25108540,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:25108523..25108540,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_at_chr12:25108523..25108540,+ | |description=CAGE_peak_at_chr12:25108523..25108540,+ | ||
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|ontology_enrichment_celltype=CL:0002057!1.74e-49!42;CL:0000860!9.73e-46!45;CL:0002009!3.63e-37!65;CL:0002194!1.51e-35!63;CL:0000576!1.51e-35!63;CL:0000040!1.51e-35!63;CL:0000559!1.51e-35!63;CL:0000738!4.11e-34!140;CL:0000557!1.87e-33!71;CL:0002031!2.28e-31!124;CL:0000839!2.44e-31!70;CL:0002087!5.98e-31!119;CL:0000766!1.29e-30!76;CL:0000988!9.69e-29!182;CL:0002032!1.73e-27!165;CL:0000837!1.73e-27!165;CL:0000037!5.59e-26!172;CL:0000566!5.59e-26!172;CL:0000763!1.83e-25!112;CL:0000049!1.83e-25!112;CL:0000453!7.18e-12!5;CL:0000134!2.90e-10!358;CL:0002320!7.13e-10!365;CL:0000219!1.68e-08!390;CL:0000034!6.59e-07!444;CL:0000048!7.18e-07!430 | |ontology_enrichment_celltype=CL:0002057!1.74e-49!42;CL:0000860!9.73e-46!45;CL:0002009!3.63e-37!65;CL:0002194!1.51e-35!63;CL:0000576!1.51e-35!63;CL:0000040!1.51e-35!63;CL:0000559!1.51e-35!63;CL:0000738!4.11e-34!140;CL:0000557!1.87e-33!71;CL:0002031!2.28e-31!124;CL:0000839!2.44e-31!70;CL:0002087!5.98e-31!119;CL:0000766!1.29e-30!76;CL:0000988!9.69e-29!182;CL:0002032!1.73e-27!165;CL:0000837!1.73e-27!165;CL:0000037!5.59e-26!172;CL:0000566!5.59e-26!172;CL:0000763!1.83e-25!112;CL:0000049!1.83e-25!112;CL:0000453!7.18e-12!5;CL:0000134!2.90e-10!358;CL:0002320!7.13e-10!365;CL:0000219!1.68e-08!390;CL:0000034!6.59e-07!444;CL:0000048!7.18e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.24e-61;33!CL:0002057;1.24e-61;33!CL:0000473;6.71e-41;39!CL:0000234;6.71e-41;39!CL:0000576;2.07e-30;48!CL:0000766;8.76e-17;69!CL:0002087;2.89e-14;104!CL:0000453;1.10e-11;5!CL:0000738;1.11e-09;136!CL:0000763;6.70e-08;100 | |ontology_enrichment_celltype_v019=CL:0000860;1.24e-61;33!CL:0002057;1.24e-61;33!CL:0000473;6.71e-41;39!CL:0000234;6.71e-41;39!CL:0000576;2.07e-30;48!CL:0000766;8.76e-17;69!CL:0002087;2.89e-14;104!CL:0000453;1.10e-11;5!CL:0000738;1.11e-09;136!CL:0000763;6.70e-08;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.59e-56,42;CL:0002057,1.59e-56,42;CL:0000473,5.91e-49,48;CL:0000234,5.91e-49,48;CL:0002009,5.32e-41,61;CL:0002194,2.37e-38,59;CL:0000576,2.37e-38,59;CL:0000040,2.37e-38,59;CL:0000559,2.37e-38,59;CL:0000557,5.22e-37,67;CL:0000839,6.42e-34,66;CL:0000738,5.37e-31,136;CL:0000766,8.54e-31,72;CL:0002031,2.20e-30,120;CL:0002087,3.12e-29,115;CL:0000988,1.20e-26,177;CL:0000763,3.26e-26,108;CL:0000049,3.26e-26,108;CL:0002032,2.03e-25,161;CL:0000837,2.03e-25,161;CL:0000037,3.75e-24,168;CL:0000453,9.49e-12,5;CL:0000134,1.02e-08,354;CL:0002320,1.92e-08,361;CL:0000219,1.76e-07,386;CL:0000990,9.84e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.21e-40;42!CL:0000049;2.21e-07;108 | |ontology_enrichment_development_v019=CL:0002057;1.21e-40;42!CL:0000049;2.21e-07;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:630;1.01e-07;1!DOID:0050177;1.01e-07;1!DOID:0050427;1.01e-07;1!DOID:0060060;2.04e-07;1!DOID:0060061;2.04e-07;1!DOID:8691;2.04e-07;1 | |ontology_enrichment_disease_v019=DOID:630;1.01e-07;1!DOID:0050177;1.01e-07;1!DOID:0050427;1.01e-07;1!DOID:0060060;2.04e-07;1!DOID:0060061;2.04e-07;1!DOID:8691;2.04e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:630,1.01e-07,1;DOID:0050177,1.01e-07,1;DOID:0050427,1.01e-07,1;DOID:0060060,1.39e-07,1;DOID:0060061,1.39e-07,1;DOID:8691,1.39e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!7.49e-31!102;UBERON:0003061!7.49e-31!102;UBERON:0002371!6.40e-29!80;UBERON:0002193!2.23e-27!112;UBERON:0001474!2.02e-26!86;UBERON:0004765!1.81e-21!101;UBERON:0001434!1.81e-21!101;UBERON:0002405!4.25e-21!115;UBERON:0003081!3.20e-11!216;UBERON:0002204!2.66e-10!167;UBERON:0002384!4.19e-10!375 | |ontology_enrichment_uberon=UBERON:0002390!7.49e-31!102;UBERON:0003061!7.49e-31!102;UBERON:0002371!6.40e-29!80;UBERON:0002193!2.23e-27!112;UBERON:0001474!2.02e-26!86;UBERON:0004765!1.81e-21!101;UBERON:0001434!1.81e-21!101;UBERON:0002405!4.25e-21!115;UBERON:0003081!3.20e-11!216;UBERON:0002204!2.66e-10!167;UBERON:0002384!4.19e-10!375 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.48e-32,76;UBERON:0001474,1.50e-29,82;UBERON:0002390,2.31e-29,98;UBERON:0003061,2.31e-29,98;UBERON:0004765,1.41e-26,90;UBERON:0002193,3.01e-26,108;UBERON:0002405,1.36e-25,93;UBERON:0001434,1.61e-23,100;UBERON:0002204,1.99e-12,167;UBERON:0003081,7.21e-12,203;UBERON:0002384,5.62e-09,371 | |||
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|short_description=p@chr12:25108523..25108540,+ | |short_description=p@chr12:25108523..25108540,+ | ||
}} | }} |
Latest revision as of 07:44, 24 July 2015
Short description: | p@chr12:25108523..25108540, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:25108523..25108540, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.59e-56 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.59e-56 | 42 |
defensive cell | 5.91e-49 | 48 |
phagocyte | 5.91e-49 | 48 |
macrophage dendritic cell progenitor | 5.32e-41 | 61 |
monopoietic cell | 2.37e-38 | 59 |
monocyte | 2.37e-38 | 59 |
monoblast | 2.37e-38 | 59 |
promonocyte | 2.37e-38 | 59 |
granulocyte monocyte progenitor cell | 5.22e-37 | 67 |
myeloid lineage restricted progenitor cell | 6.42e-34 | 66 |
leukocyte | 5.37e-31 | 136 |
myeloid leukocyte | 8.54e-31 | 72 |
hematopoietic lineage restricted progenitor cell | 2.20e-30 | 120 |
nongranular leukocyte | 3.12e-29 | 115 |
hematopoietic cell | 1.20e-26 | 177 |
myeloid cell | 3.26e-26 | 108 |
common myeloid progenitor | 3.26e-26 | 108 |
hematopoietic oligopotent progenitor cell | 2.03e-25 | 161 |
hematopoietic multipotent progenitor cell | 2.03e-25 | 161 |
hematopoietic stem cell | 3.75e-24 | 168 |
Langerhans cell | 9.49e-12 | 5 |
mesenchymal cell | 1.02e-08 | 354 |
connective tissue cell | 1.92e-08 | 361 |
motile cell | 1.76e-07 | 386 |
conventional dendritic cell | 9.84e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.48e-32 | 76 |
bone element | 1.50e-29 | 82 |
hematopoietic system | 2.31e-29 | 98 |
blood island | 2.31e-29 | 98 |
skeletal element | 1.41e-26 | 90 |
hemolymphoid system | 3.01e-26 | 108 |
immune system | 1.36e-25 | 93 |
skeletal system | 1.61e-23 | 100 |
musculoskeletal system | 1.99e-12 | 167 |
lateral plate mesoderm | 7.21e-12 | 203 |
connective tissue | 5.62e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.01e-07 | 1 |
monogenic disease | 1.01e-07 | 1 |
xeroderma pigmentosum | 1.01e-07 | 1 |
non-Hodgkin lymphoma | 1.39e-07 | 1 |
cutaneous T cell lymphoma | 1.39e-07 | 1 |
mycosis fungoides | 1.39e-07 | 1 |