FFCP PHASE1:Hg19::chr12:6387474..6387502,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:6387474..6387502,+ | |||
|description=CAGE_peak_at_chr12:6387474..6387502,+ | |description=CAGE_peak_at_chr12:6387474..6387502,+ | ||
|id=chr12:6387474..6387502,+ | |id=chr12:6387474..6387502,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.29e-16!43;CL:0000066!1.24e-12!254;CL:0000223!3.65e-12!59;CL:0002251!1.53e-11!21;CL:0000039!5.64e-07!7;CL:0000586!5.64e-07!7 | |ontology_enrichment_celltype=CL:0002076!1.29e-16!43;CL:0000066!1.24e-12!254;CL:0000223!3.65e-12!59;CL:0002251!1.53e-11!21;CL:0000039!5.64e-07!7;CL:0000586!5.64e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0001014;8.84e-13;2!CL:0001016;8.84e-13;2!CL:0002537;1.38e-10;5!CL:0000349;5.31e-10;19!CL:0002577;3.62e-08;3!CL:0002076;1.37e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,8.86e-13,2;CL:0001016,8.86e-13,2;CL:0002537,9.47e-11,5;CL:0000349,4.21e-10,19;CL:0002076,3.21e-09,42;CL:0002577,3.25e-08,3;CL:0000223,7.38e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.93e-13;2!UBERON:0005754;4.77e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!9.85e-16!14;DOID:305!5.69e-13!106;DOID:0050687!6.41e-09!143;DOID:299!3.02e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.23e-18;14!DOID:299;1.33e-07;25!DOID:3151;4.77e-07;1!DOID:178;4.77e-07;1!DOID:326;4.77e-07;1!DOID:3978;4.77e-07;1!DOID:3394;4.77e-07;1!DOID:5844;4.77e-07;1!DOID:3149;4.77e-07;1!DOID:5093;8.50e-07;4!DOID:1612;8.50e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.97e-18,14;DOID:305,1.81e-11,106;DOID:0050687,9.56e-09,143;DOID:299,1.58e-07,25;DOID:3151,4.01e-07,1;DOID:3149,4.01e-07,1;DOID:178,4.25e-07,1;DOID:326,4.25e-07,1;DOID:3978,4.25e-07,1;DOID:3394,4.25e-07,1;DOID:5844,4.25e-07,1;DOID:5093,8.04e-07,4;DOID:1612,8.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.91e-11!14;UBERON:0000158!3.91e-11!14;UBERON:0000344!1.40e-09!12;UBERON:0001004!8.24e-09!72;UBERON:0000974!3.79e-08!10;UBERON:0004119!5.42e-08!169;UBERON:0000925!5.42e-08!169;UBERON:0006595!5.42e-08!169;UBERON:0003729!9.97e-08!5;UBERON:0003124!2.97e-07!7;UBERON:0000464!3.58e-07!104;UBERON:0000166!4.17e-07!21;UBERON:0003343!4.28e-07!4;UBERON:0004785!4.28e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;7.41e-15;6!UBERON:0003343;5.26e-13;4!UBERON:0004785;5.26e-13;4!UBERON:0000058;2.28e-09;10!UBERON:0005631;3.44e-09;10!UBERON:0000158;3.44e-09;10!UBERON:0006947;9.06e-09;3!UBERON:0004054;9.06e-09;3!UBERON:0000478;8.44e-08;24!UBERON:0000305;1.09e-07;7!UBERON:0001301;2.36e-07;1!UBERON:0000998;4.77e-07;1!UBERON:0006868;4.77e-07;1!UBERON:0005904;9.00e-07;4!UBERON:0000997;9.77e-07;1!UBERON:0004913;9.77e-07;1!UBERON:0005056;9.77e-07;1!UBERON:0003703;9.77e-07;1!UBERON:0004176;9.77e-07;1!UBERON:0001174;9.77e-07;1!UBERON:0004914;9.77e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,6.56e-14,14;UBERON:0000158,6.56e-14,14;UBERON:0003343,6.22e-13,4;UBERON:0004785,6.22e-13,4;UBERON:0000974,6.84e-09,10;UBERON:0006947,8.73e-09,3;UBERON:0004054,8.73e-09,3;UBERON:0000478,7.07e-08,24;UBERON:0000305,8.31e-08,7;UBERON:0003124,1.02e-07,7;UBERON:0004175,1.16e-07,25;UBERON:0000058,2.27e-07,19;UBERON:0001301,2.36e-07,1;UBERON:0000998,4.51e-07,1;UBERON:0006868,4.51e-07,1;UBERON:0004871,6.98e-07,8;UBERON:0005904,8.75e-07,4;UBERON:0000997,8.98e-07,1;UBERON:0005056,8.98e-07,1 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,6.97801167972428,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.164201178899891,0.314843125254717,0,0,0.154816123316076,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0.697287110717054,0,0.619412741790207,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0.521482918420201,0.434377689410233,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.130979075497713,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,4.74122638775565,3.43394464837949,0,0,0,0,0,0.425325291727159,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,1.5156378572313,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0.0920809889358963,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.515205058238611,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0,1.65896526242959,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17781969722645,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,1.90995587790152,1.48482340416319,3.07160702099232,0,0,0,0,0,0.398495976502139,0,0,0,0.123084805461069,0,0.808815160325942,0,0,0,0,0,0,0,0,0,0.787139999965761,0,0.1137934482855,3.30529745380596,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0.0769502585037971,0,0.69169171316418,0.179515288819544,4.23724750495832,3.19001159731919,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,1.30586246527318,0.424059214301822,0,0,0,0,0,0,0,0.067401132980677,0,0,0,10.5658894223328,0,0.789168805698781,0,0,0,1.05226393590145,0,0,0,0.313932918407225,0,0,0,0.694238953340524,1.37189356380129,2.17648016451006,7.5132467344073,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0.240476460754601,0,0,1.00863292007874,0,0,0.288109595976299,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,2.59582700648688,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0,0,2.4747128070665,17.0236430002749,0,2.68347750079413,0.236417121897595,0.157363764404994,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0.704815022316672,0.106787412567695,0.157204305099666,0,0,0,0.243585196761792,0.638341257770182,0,0,0,0,0.785270481251171,0,0,0,0,0.110929051536852,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0.211312123358627,0.19998739585493,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,1.37406805901436,1.06172751012966,0.917142992608395,2.19498765685643,0,0,0,0.0752103283492573,0,0,0.523813388962845,0,1.03499260351932,0,0,0,0,0,0,0,0,1.27762427639595,0,0,0,0,0.354809480650555,0.115233987555779,0,0,0,0,0.667388411352415,0,0,0.840816489941367,0,0,0,0.0714765441766563,0,0,0,0,0.207216164163037,0.17071847709395,0,0.860454717640555,0,0,2.54032230114557,6.64409918777745,0,0,0.223710863595585,0.196300467230486,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0.352894871715692,1.20362050033752,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0.801652215796681,0.735159196278759,0,0.0757786982182394,0,0,0,1.0661699095049,0.23806443146374,0.129177819672012,0.0620747142958579,0,0.190941474834495,1.41482032270754,0.435433495793923,0,0.0673520530145875,0.286888821570705,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:6387474..6387502,+ | |short_description=p@chr12:6387474..6387502,+ | ||
}} | }} |
Latest revision as of 11:12, 24 July 2015
Short description: | p@chr12:6387474..6387502, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:6387474..6387502, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 8.86e-13 | 2 |
immature CD1a-positive Langerhans cell | 8.86e-13 | 2 |
amnion mesenchymal stem cell | 9.47e-11 | 5 |
extraembryonic cell | 4.21e-10 | 19 |
endo-epithelial cell | 3.21e-09 | 42 |
placental epithelial cell | 3.25e-08 | 3 |
endodermal cell | 7.38e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 6.56e-14 | 14 |
membranous layer | 6.56e-14 | 14 |
mucosa of oral region | 6.22e-13 | 4 |
respiratory system mucosa | 6.22e-13 | 4 |
neck | 6.84e-09 | 10 |
male genital duct | 8.73e-09 | 3 |
internal male genitalia | 8.73e-09 | 3 |
extraembryonic structure | 7.07e-08 | 24 |
amnion | 8.31e-08 | 7 |
chorion | 1.02e-07 | 7 |
internal genitalia | 1.16e-07 | 25 |
duct | 2.27e-07 | 19 |
epididymis | 2.36e-07 | 1 |
seminal vesicle | 4.51e-07 | 1 |
seminal fluid secreting gland | 4.51e-07 | 1 |
somatic layer of lateral plate mesoderm | 6.98e-07 | 8 |
duct of male reproductive system | 8.75e-07 | 4 |
mammalian vulva | 8.98e-07 | 1 |
external female genitalia | 8.98e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.97e-18 | 14 |
carcinoma | 1.81e-11 | 106 |
cell type cancer | 9.56e-09 | 143 |
adenocarcinoma | 1.58e-07 | 25 |
skin squamous cell carcinoma | 4.01e-07 | 1 |
keratoacanthoma | 4.01e-07 | 1 |
vascular disease | 4.25e-07 | 1 |
ischemia | 4.25e-07 | 1 |
extrinsic cardiomyopathy | 4.25e-07 | 1 |
myocardial ischemia | 4.25e-07 | 1 |
myocardial infarction | 4.25e-07 | 1 |
thoracic cancer | 8.04e-07 | 4 |
breast cancer | 8.04e-07 | 4 |