FFCP PHASE1:Hg19::chr13:38508582..38508616,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-85bp_to_CR627261_5end | |||
|cluster_id=chr13:38508582..38508616,+ | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_2_at_CR627261_5end | |||
|id=chr13:38508582..38508616,+ | |||
|ontology_enrichment_celltype=CL:0002553!7.46e-16!1 | |||
|ontology_enrichment_celltype_v019=CL:0002553;3.99e-50;1!CL:0000082;1.72e-11;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.99e-50,1;CL:0000082,1.72e-11,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.06e-15;30!UBERON:0008947;6.91e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1324;2.94e-14;15!DOID:5409;1.00e-13;4!DOID:0050615;1.95e-13;16!DOID:1325;2.03e-08;7!DOID:3904;2.03e-08;7!DOID:3905;7.91e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,2.94e-14,15;DOID:5409,1.00e-13,4;DOID:0050615,1.95e-13,16;DOID:1325,2.03e-08,7;DOID:3904,2.03e-08,7;DOID:305,2.62e-08,106;DOID:3905,7.91e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0003978!1.27e-19!3;UBERON:0009751!1.27e-19!3;UBERON:0000946!1.27e-19!3;UBERON:0002523!1.27e-19!3;UBERON:0005983!1.27e-19!3;UBERON:0002165!1.27e-19!3;UBERON:0002062!1.27e-19!3;UBERON:0007280!1.27e-19!3;UBERON:0002135!2.06e-15!1;UBERON:0002146!2.75e-15!1;UBERON:0005623!2.75e-15!1;UBERON:0002022!3.66e-15!1;UBERON:0002133!2.31e-08!2;UBERON:0002680!2.86e-07!9;UBERON:0001895!2.86e-07!9;UBERON:0010092!2.86e-07!9;UBERON:0007023!4.23e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002394;1.29e-13;4!UBERON:0003928;1.29e-13;4!UBERON:0004802;1.72e-11;19!UBERON:0000115;1.72e-11;19!UBERON:0002048;4.53e-10;22!UBERON:0004807;4.53e-10;22!UBERON:0000117;4.53e-10;22!UBERON:0000171;4.53e-10;22!UBERON:0000170;4.53e-10;22!UBERON:0002294;2.35e-08;7!UBERON:0001173;2.35e-08;7!UBERON:0000072;3.58e-07;37!UBERON:0005181;3.58e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,1.72e-11,19;UBERON:0000115,1.72e-11,19;UBERON:0002048,4.53e-10,22;UBERON:0000117,4.53e-10,22;UBERON:0000171,4.53e-10,22;UBERON:0000170,4.53e-10,22;UBERON:0005597,4.53e-10,22;UBERON:0000118,4.53e-10,22;UBERON:0002394,1.57e-09,6;UBERON:0003928,1.57e-09,6;UBERON:0004807,3.92e-08,28;UBERON:0005178,7.16e-07,34;UBERON:0002224,7.16e-07,34;UBERON:0002294,8.85e-07,9;UBERON:0001173,8.85e-07,9;UBERON:0004912,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97710372524119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20228299314188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397901550322736,0,0,0,9.05777061400041,0.0771741581079447,0,15.5204707799303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@CR627261 | |||
}} |
Latest revision as of 15:54, 24 July 2015
Short description: | p2@CR627261 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CR627261_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | -85bp_to_CR627261_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.99e-50 | 1 |
epithelial cell of lung | 1.72e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 1.72e-11 | 19 |
lung epithelium | 1.72e-11 | 19 |
lung | 4.53e-10 | 22 |
respiratory tube | 4.53e-10 | 22 |
respiration organ | 4.53e-10 | 22 |
pair of lungs | 4.53e-10 | 22 |
lung primordium | 4.53e-10 | 22 |
lung bud | 4.53e-10 | 22 |
bile duct | 1.57e-09 | 6 |
digestive system duct | 1.57e-09 | 6 |
respiratory system epithelium | 3.92e-08 | 28 |
thoracic cavity element | 7.16e-07 | 34 |
thoracic cavity | 7.16e-07 | 34 |
biliary system | 8.85e-07 | 9 |
biliary tree | 8.85e-07 | 9 |
biliary bud | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 2.94e-14 | 15 |
lung small cell carcinoma | 1.00e-13 | 4 |
respiratory system cancer | 1.95e-13 | 16 |
bronchus cancer | 2.03e-08 | 7 |
bronchogenic carcinoma | 2.03e-08 | 7 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 7.91e-07 | 9 |