FFCP PHASE1:Hg19::chr17:48270370..48270427,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_X98708,Y15918_5end | |association_with_transcript=0bp_to_X98708,Y15918_5end | ||
|cluster_id=chr17:48270370..48270427,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_1_at_X98708_5end,CAGE_peak_1_at_Y15918_5end | |description=CAGE_peak_1_at_X98708_5end,CAGE_peak_1_at_Y15918_5end | ||
|id=chr17:48270370..48270427,- | |id=chr17:48270370..48270427,- | ||
|ontology_enrichment_celltype=CL:0000055!8.66e-36!180;CL:0000057!3.44e-24!75;CL:0000048!6.27e-16!430;CL:0000183!6.64e-15!59;CL:0000723!6.94e-15!436;CL:0000680!3.53e-14!57;CL:0000056!3.53e-14!57;CL:0000355!3.53e-14!57;CL:0000034!7.56e-14!444;CL:0000187!1.49e-13!54;CL:0000393!1.07e-10!60;CL:0000211!1.07e-10!60;CL:0002371!1.08e-10!591;CL:0000192!2.00e-09!42;CL:0000514!2.00e-09!42;CL:0000144!3.71e-09!625;CL:0002320!6.92e-09!365;CL:0002334!8.14e-08!12;CL:0000134!2.37e-07!358;CL:0002620!3.45e-07!23;CL:0000327!3.54e-07!14;CL:0000499!6.38e-07!27 | |ontology_enrichment_celltype=CL:0000055!8.66e-36!180;CL:0000057!3.44e-24!75;CL:0000048!6.27e-16!430;CL:0000183!6.64e-15!59;CL:0000723!6.94e-15!436;CL:0000680!3.53e-14!57;CL:0000056!3.53e-14!57;CL:0000355!3.53e-14!57;CL:0000034!7.56e-14!444;CL:0000187!1.49e-13!54;CL:0000393!1.07e-10!60;CL:0000211!1.07e-10!60;CL:0002371!1.08e-10!591;CL:0000192!2.00e-09!42;CL:0000514!2.00e-09!42;CL:0000144!3.71e-09!625;CL:0002320!6.92e-09!365;CL:0002334!8.14e-08!12;CL:0000134!2.37e-07!358;CL:0002620!3.45e-07!23;CL:0000327!3.54e-07!14;CL:0000499!6.38e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000499;1.64e-08;28!CL:0000057;4.04e-08;73!CL:0000327;5.59e-08;15!CL:0002320;2.25e-07;188!CL:0000134;5.06e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.11e-20,76;CL:0000048,4.43e-15,427;CL:0000723,2.30e-14,433;CL:0000034,1.89e-13,441;CL:0002320,1.66e-11,361;CL:0000134,5.65e-10,354;CL:0000219,1.06e-08,386;CL:0000499,1.79e-08,28;CL:0000327,5.73e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.63e-14!83;UBERON:0002329!1.63e-14!83;UBERON:0003077!1.63e-14!83;UBERON:0003059!1.63e-14!83;UBERON:0007282!1.63e-14!83;UBERON:0009618!1.63e-14!83;UBERON:0007285!1.63e-14!83;UBERON:0001134!1.86e-14!61;UBERON:0002036!1.86e-14!61;UBERON:0003082!1.86e-14!61;UBERON:0002385!3.95e-14!63;UBERON:0001015!3.95e-14!63;UBERON:0000383!3.95e-14!63;UBERON:0004290!4.82e-13!70;UBERON:0000486!4.39e-10!82;UBERON:0005256!9.34e-10!143;UBERON:0002384!5.58e-09!375;UBERON:0001013!3.12e-08!14;UBERON:0002331!5.75e-08!10;UBERON:0000358!5.75e-08!10;UBERON:0000307!5.75e-08!10;UBERON:0000091!5.75e-08!10;UBERON:0000087!5.75e-08!10;UBERON:0007806!5.75e-08!10;UBERON:0008780!5.75e-08!10;UBERON:0005728!5.75e-08!10;UBERON:0004872!3.02e-07!84;UBERON:0002100!7.07e-07!216 | |ontology_enrichment_uberon=UBERON:0000914!1.63e-14!83;UBERON:0002329!1.63e-14!83;UBERON:0003077!1.63e-14!83;UBERON:0003059!1.63e-14!83;UBERON:0007282!1.63e-14!83;UBERON:0009618!1.63e-14!83;UBERON:0007285!1.63e-14!83;UBERON:0001134!1.86e-14!61;UBERON:0002036!1.86e-14!61;UBERON:0003082!1.86e-14!61;UBERON:0002385!3.95e-14!63;UBERON:0001015!3.95e-14!63;UBERON:0000383!3.95e-14!63;UBERON:0004290!4.82e-13!70;UBERON:0000486!4.39e-10!82;UBERON:0005256!9.34e-10!143;UBERON:0002384!5.58e-09!375;UBERON:0001013!3.12e-08!14;UBERON:0002331!5.75e-08!10;UBERON:0000358!5.75e-08!10;UBERON:0000307!5.75e-08!10;UBERON:0000091!5.75e-08!10;UBERON:0000087!5.75e-08!10;UBERON:0007806!5.75e-08!10;UBERON:0008780!5.75e-08!10;UBERON:0005728!5.75e-08!10;UBERON:0004872!3.02e-07!84;UBERON:0002100!7.07e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.28e-09;10!UBERON:0004457;8.47e-09;9!UBERON:0000042;8.47e-09;9!UBERON:0003688;1.04e-08;6!UBERON:0002358;1.04e-08;6!UBERON:0003684;1.04e-08;6!UBERON:0001178;1.04e-08;6!UBERON:0000478;6.86e-08;24!UBERON:0001013;7.11e-08;14!UBERON:0002384;2.89e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.21e-12,371;UBERON:0002331,2.61e-09,10;UBERON:0000358,2.61e-09,10;UBERON:0000307,2.61e-09,10;UBERON:0000091,2.61e-09,10;UBERON:0000087,2.61e-09,10;UBERON:0007010,2.61e-09,10;UBERON:0007806,2.61e-09,10;UBERON:0008780,2.61e-09,10;UBERON:0005728,2.61e-09,10;UBERON:0003688,1.17e-08,6;UBERON:0002358,1.17e-08,6;UBERON:0003684,1.17e-08,6;UBERON:0001178,1.17e-08,6;UBERON:0000478,5.45e-08,24;UBERON:0001013,7.40e-08,14 | |||
|phase1_expression=5.26867299884614,4.28201047781966,7.75249222527841,11.0080628188443,13.4088328328186,4.36169262050184,2.53299878168311,2.52687949370732,0.783556884599516,0,0.697801167972428,0,2.90143676051299,0.866364470720326,2.65117900582333,0.672325146451775,0,0.730310090387373,0.487932798790507,1.47745269692145,2.24400760368678,4.07491137921514,0,0,0.376627918784408,5.8074188368443,6.56804715599566,4.48651453487972,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,3.35350429851818,1.91793842765295,3.97583067623023,5.0133791063589,3.0417768981773,3.9764297352555,4.86634870302636,0.283604451492204,1.55210578223795,0.527008714158756,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4061305025549,2.78587125662075,0.794455084879313,26.6758057296397,7.09336764396714,1.68203280042692,3.20246987189115,6.41335625884616,0.622422070799533,1.0776853765575,1.30769522490767,4.23800797405808,0.576175924479999,0.468642863667593,0,0,0.597794722207204,0.469737994575059,0,0.561803226808994,0.204154171254893,0.61417158655884,0.929932030581889,13.0680314301026,10.1379441004208,2.73048408581408,5.03032699271367,0,0.250237039743928,0.277064115484183,3.07284334616587,3.67785354958824,6.00952235626387,1.02088964844019,3.58779271377724,4.27114777637135,3.60284231971255,3.60109315301283,3.19462840639161,5.15281080091258,2.97786970130544,3.88185564154912,3.99491721160914,2.01947019395292,3.12969655383818,3.71785930683267,3.90510551768276,0.806016785821122,1.01736355386293,0,0,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0,0,0,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0,5.60967095213783,7.8199062152966,22.0513067078313,0,0,0,0,0,0.514703430895577,0,0,0,0,0.325808305310325,4.15973914111831,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,1.71072446022705,0,0,0,0.784917590417525,3.05172048183296,0.4400297149257,2.58543431515556,7.15312891703765,3.381211010224,2.92531928243358,2.08014873822732,0.257207374262142,2.83698264046557,1.0656887160644,3.71742783511184,9.76718889704597,1.64648067356154,1.30294473717494,2.48774364119782,0.791951872933429,0,0,1.09970290300263,0,0,0,5.27174682081482,12.6348129417525,1.42636905040718,0.579125226670317,1.02738161275192,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.49076596687656,1.00034104211935,1.89885516589815,22.2528821837964,16.593895958136,9.61984731707001,4.56851518471581,4.51419149591578,4.5481500811197,3.10419213877515,1.99267679560631,2.21243002250044,0.60818530127658,6.85304051119592,7.54915532383883,0,0,0,0,8.32177197552485,3.62868351995616,7.93944985020086,4.14347327877769,12.9103643439214,11.9169408807802,4.09365799253363,17.8547852469404,8.90508398669946,0.616838775210622,2.30830242907065,0.492762936082855,0.519254429183621,0.697262270759755,0,0,0,2.29628896329214,1.0925470080403,3.93373244878272,0,0,0.784349769176855,0,0,0,0,0.215915916102139,0,0.541892875087706,2.00675909541941,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,4.82051789532479,1.25671933779759,1.07834031980251,0.921022048356777,0.551346289938122,1.07420244868274,0.725083469571143,0.0852266274161009,4.27353771104339,0.165284915360978,0,0,0.10115778085555,0.929691098594572,12.5924938732256,1.3940745403212,0.616067160352178,0,0,0.9266210955196,0.286249773483982,0,2.84741482246853,2.85945290885737,2.55897791311334,1.28381696410176,0.95460974377781,2.35484592059769,0.719489830333259,2.74537029736055,1.53156123049392,0.404364963146632,0,0.421258456238981,2.43816869544795,0.974853958525138,0,3.00299805097569,6.6460553018245,2.26016233240486,1.65409603063837,0,0.438450885253763,3.47265320560013,2.62357900818653,1.01455188481352,0.92947049429925,1.40847801266121,0.860468113224309,1.57198465620994,0.7133421029625,0.354761064070598,3.16661452946496,2.63435914367922,1.13841952129715,2.0996083214699,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,2.09244169283818,5.59871257791253,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38510465306835,0.227884111694002,0,0,0,0,3.29751336246704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,5.33738031625119,3.83048210734159,7.20511451587642,0,9.63093176758547,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0.171986032471617,0,0.0730893170861856,0,0,0.0882561266915003,4.51961481561065,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,1.28929632425987,0.262887354279314,0.558564802544508,0,0,0.798716001995964,0.429226048136571,0,0.268733889946905,6.12509802022086,0,0,0,0,0,0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| ||
|short_description=p1@X98708,p1@Y15918 | |short_description=p1@X98708,p1@Y15918 | ||
}} | }} |
Latest revision as of 18:36, 25 July 2015
Short description: | p1@X98708, p1@Y15918 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_X98708_5end, CAGE_peak_1_at_Y15918_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_X98708, Y15918_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.11e-20 | 76 |
multi fate stem cell | 4.43e-15 | 427 |
somatic stem cell | 2.30e-14 | 433 |
stem cell | 1.89e-13 | 441 |
connective tissue cell | 1.66e-11 | 361 |
mesenchymal cell | 5.65e-10 | 354 |
motile cell | 1.06e-08 | 386 |
stromal cell | 1.79e-08 | 28 |
extracellular matrix secreting cell | 5.73e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.21e-12 | 371 |
umbilical cord | 2.61e-09 | 10 |
blastocyst | 2.61e-09 | 10 |
blastula | 2.61e-09 | 10 |
bilaminar disc | 2.61e-09 | 10 |
inner cell mass | 2.61e-09 | 10 |
cleaving embryo | 2.61e-09 | 10 |
connecting stalk | 2.61e-09 | 10 |
inner cell mass derived epiblast | 2.61e-09 | 10 |
extraembryonic mesoderm | 2.61e-09 | 10 |
omentum | 1.17e-08 | 6 |
peritoneum | 1.17e-08 | 6 |
abdominal cavity | 1.17e-08 | 6 |
visceral peritoneum | 1.17e-08 | 6 |
extraembryonic structure | 5.45e-08 | 24 |
adipose tissue | 7.40e-08 | 14 |