FFCP PHASE1:Hg19::chr17:79477707..79477767,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:79477707..79477767,-
|short_description=p@chr17:79477707..79477767,-
|description=CAGE_peak_at_chr17:79477707..79477767,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:79477707..79477767,- | |||
|coexpression_cluster_id=C845 | |||
|description=CAGE_peak_at_chr17:79477707..79477767,- | |||
|id=chr17:79477707..79477767,- | |||
|ontology_enrichment_celltype=CL:0000144!3.27e-19!625;CL:0000548!5.45e-19!679;CL:0000004!5.45e-19!679;CL:0000255!5.45e-19!679;CL:0000012!3.11e-18!682;CL:0002371!1.35e-17!591;CL:0000055!1.04e-15!180;CL:0002321!1.14e-13!248;CL:0000220!1.63e-13!246;CL:0000222!1.30e-11!119;CL:0000003!4.48e-11!722;CL:0000393!9.20e-10!60;CL:0000211!9.20e-10!60;CL:0000192!1.03e-08!42;CL:0000514!1.03e-08!42;CL:0000183!1.67e-08!59;CL:0000680!2.08e-08!57;CL:0000056!2.08e-08!57;CL:0000355!2.08e-08!57;CL:0000187!6.77e-08!54;CL:0000359!2.88e-07!32;CL:0000063!8.41e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.62e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.49e-13,250;CL:0000222,1.79e-11,121;CL:0000393,1.42e-09,61;CL:0000211,1.42e-09,61;CL:0000192,2.02e-08,43;CL:0000514,2.02e-08,43;CL:0000680,3.09e-08,58;CL:0000056,3.09e-08,58;CL:0000355,3.09e-08,58;CL:0000187,1.00e-07,55;CL:0000359,3.32e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.26e-09!79;UBERON:0007798!1.26e-09!79;UBERON:0000486!1.72e-09!82;UBERON:0001637!1.67e-08!42;UBERON:0003509!1.67e-08!42;UBERON:0004572!1.67e-08!42;UBERON:0004290!7.91e-08!70;UBERON:0005256!1.21e-07!143;UBERON:0000914!1.59e-07!83;UBERON:0002329!1.59e-07!83;UBERON:0003077!1.59e-07!83;UBERON:0003059!1.59e-07!83;UBERON:0007282!1.59e-07!83;UBERON:0009618!1.59e-07!83;UBERON:0007285!1.59e-07!83;UBERON:0000055!1.84e-07!69;UBERON:0001981!2.04e-07!60;UBERON:0007500!2.04e-07!60;UBERON:0004537!2.04e-07!60;UBERON:0006965!2.04e-07!60;UBERON:0001134!7.74e-07!61;UBERON:0002036!7.74e-07!61;UBERON:0003082!7.74e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,7.11e-10,78;UBERON:0007798,7.11e-10,78;UBERON:0007503,1.70e-09,78;UBERON:0000486,1.90e-09,83;UBERON:0000926,2.17e-09,315;UBERON:0004120,2.17e-09,315;UBERON:0006603,2.17e-09,315;UBERON:0001637,1.91e-08,42;UBERON:0003509,1.91e-08,42;UBERON:0004572,1.91e-08,42;UBERON:0007524,8.04e-08,73;UBERON:0002329,8.73e-08,71;UBERON:0003059,8.73e-08,71;UBERON:0007282,8.73e-08,71;UBERON:0004290,8.73e-08,71;UBERON:0009618,8.73e-08,71;UBERON:0000055,1.14e-07,68;UBERON:0007500,1.18e-07,59;UBERON:0001981,1.18e-07,59;UBERON:0004537,1.18e-07,59;UBERON:0006965,1.18e-07,59;UBERON:0003077,1.95e-07,72;UBERON:0007285,1.95e-07,72;UBERON:0000490,4.60e-07,148;UBERON:0001134,8.57e-07,62;UBERON:0002036,8.57e-07,62;UBERON:0003082,8.57e-07,62 | |||
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| ||
|short_description=p@chr17:79477707..79477767,- | |||
}} | }} |
Latest revision as of 22:43, 25 July 2015
Short description: | p@chr17:79477707..79477767, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:79477707..79477767, - |
Coexpression cluster: | C845_Alveolar_Hair_Olfactory_Osteoblast_Endothelial_Fibroblast_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.49e-13 | 250 |
mesodermal cell | 1.79e-11 | 121 |
electrically responsive cell | 1.42e-09 | 61 |
electrically active cell | 1.42e-09 | 61 |
smooth muscle cell | 2.02e-08 | 43 |
smooth muscle myoblast | 2.02e-08 | 43 |
muscle precursor cell | 3.09e-08 | 58 |
myoblast | 3.09e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-08 | 58 |
muscle cell | 1.00e-07 | 55 |
vascular associated smooth muscle cell | 3.32e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
vasculature | 7.11e-10 | 78 |
vascular system | 7.11e-10 | 78 |
epithelial vesicle | 1.70e-09 | 78 |
multilaminar epithelium | 1.90e-09 | 83 |
mesoderm | 2.17e-09 | 315 |
mesoderm-derived structure | 2.17e-09 | 315 |
presumptive mesoderm | 2.17e-09 | 315 |
artery | 1.91e-08 | 42 |
arterial blood vessel | 1.91e-08 | 42 |
arterial system | 1.91e-08 | 42 |
dense mesenchyme tissue | 8.04e-08 | 73 |
somite | 8.73e-08 | 71 |
presomitic mesoderm | 8.73e-08 | 71 |
presumptive segmental plate | 8.73e-08 | 71 |
dermomyotome | 8.73e-08 | 71 |
trunk paraxial mesoderm | 8.73e-08 | 71 |
vessel | 1.14e-07 | 68 |
epithelial tube open at both ends | 1.18e-07 | 59 |
blood vessel | 1.18e-07 | 59 |
blood vasculature | 1.18e-07 | 59 |
vascular cord | 1.18e-07 | 59 |
paraxial mesoderm | 1.95e-07 | 72 |
presumptive paraxial mesoderm | 1.95e-07 | 72 |
unilaminar epithelium | 4.60e-07 | 148 |
skeletal muscle tissue | 8.57e-07 | 62 |
striated muscle tissue | 8.57e-07 | 62 |
myotome | 8.57e-07 | 62 |