FFCP PHASE1:Hg19::chr19:2546698..2546709,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:2546698..2546709,- | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_at_chr19:2546698..2546709,- | |description=CAGE_peak_at_chr19:2546698..2546709,- | ||
|id=chr19:2546698..2546709,- | |id=chr19:2546698..2546709,- | ||
|ontology_enrichment_celltype=CL:0002057!4.02e-50!42;CL:0000860!3.98e-46!45;CL:0000766!2.61e-37!76;CL:0000839!1.23e-36!70;CL:0000557!5.67e-36!71;CL:0002194!6.79e-32!63;CL:0000576!6.79e-32!63;CL:0000040!6.79e-32!63;CL:0000559!6.79e-32!63;CL:0002009!1.25e-30!65;CL:0000763!1.33e-24!112;CL:0000049!1.33e-24!112;CL:0002031!1.59e-18!124;CL:0000738!1.84e-17!140;CL:0000988!3.98e-15!182;CL:0002032!5.33e-15!165;CL:0000837!5.33e-15!165;CL:0002087!1.01e-14!119;CL:0000037!6.19e-14!172;CL:0000566!6.19e-14!172;CL:0002393!2.03e-09!9;CL:0002397!2.03e-09!9;CL:0002274!1.83e-08!5;CL:0000457!1.83e-08!5;CL:0002191!1.83e-08!5;CL:0000097!1.83e-08!5;CL:0000831!1.83e-08!5;CL:0002028!1.83e-08!5 | |ontology_enrichment_celltype=CL:0002057!4.02e-50!42;CL:0000860!3.98e-46!45;CL:0000766!2.61e-37!76;CL:0000839!1.23e-36!70;CL:0000557!5.67e-36!71;CL:0002194!6.79e-32!63;CL:0000576!6.79e-32!63;CL:0000040!6.79e-32!63;CL:0000559!6.79e-32!63;CL:0002009!1.25e-30!65;CL:0000763!1.33e-24!112;CL:0000049!1.33e-24!112;CL:0002031!1.59e-18!124;CL:0000738!1.84e-17!140;CL:0000988!3.98e-15!182;CL:0002032!5.33e-15!165;CL:0000837!5.33e-15!165;CL:0002087!1.01e-14!119;CL:0000037!6.19e-14!172;CL:0000566!6.19e-14!172;CL:0002393!2.03e-09!9;CL:0002397!2.03e-09!9;CL:0002274!1.83e-08!5;CL:0000457!1.83e-08!5;CL:0002191!1.83e-08!5;CL:0000097!1.83e-08!5;CL:0000831!1.83e-08!5;CL:0002028!1.83e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.94e-43;33!CL:0002057;2.94e-43;33!CL:0000473;1.78e-34;39!CL:0000234;1.78e-34;39!CL:0000576;3.03e-28;48!CL:0000766;6.20e-26;69!CL:0000097;3.05e-16;5!CL:0002393;4.49e-13;6!CL:0002397;4.49e-13;6!CL:0000763;8.18e-12;100!CL:0000163;2.97e-09;9!CL:0002087;1.18e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.00e-54,42;CL:0002057,3.00e-54,42;CL:0000473,4.79e-53,48;CL:0000234,4.79e-53,48;CL:0000839,1.04e-51,66;CL:0000557,6.70e-51,67;CL:0000766,3.40e-47,72;CL:0002194,7.49e-42,59;CL:0000576,7.49e-42,59;CL:0000040,7.49e-42,59;CL:0000559,7.49e-42,59;CL:0002009,2.09e-40,61;CL:0000763,1.57e-30,108;CL:0000049,1.57e-30,108;CL:0002031,3.58e-27,120;CL:0000738,1.32e-23,136;CL:0002087,3.46e-20,115;CL:0002032,1.94e-19,161;CL:0000837,1.94e-19,161;CL:0000037,1.72e-18,168;CL:0000988,2.21e-17,177;CL:0000097,2.97e-16,5;CL:0002028,2.97e-16,5;CL:0000163,2.93e-09,9;CL:0002393,6.68e-09,9;CL:0002397,6.68e-09,9;CL:0000134,7.23e-08,354;CL:0002320,1.21e-07,361;CL:0000219,7.57e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.35e-36;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!3.35e-33!86;UBERON:0002371!1.20e-32!80;UBERON:0002390!7.80e-28!102;UBERON:0003061!7.80e-28!102;UBERON:0002405!1.06e-27!115;UBERON:0004765!1.29e-26!101;UBERON:0001434!1.29e-26!101;UBERON:0002193!2.45e-24!112;UBERON:0002204!6.96e-12!167;UBERON:0003081!7.27e-11!216;UBERON:0002619!5.20e-09!22;UBERON:0002020!7.19e-09!34;UBERON:0003528!7.19e-09!34;UBERON:0001950!2.65e-08!20;UBERON:0000956!1.03e-07!25;UBERON:0000203!1.03e-07!25;UBERON:0001049!1.17e-07!57;UBERON:0005068!1.17e-07!57;UBERON:0006241!1.17e-07!57;UBERON:0007135!1.17e-07!57;UBERON:0001872!3.35e-07!5;UBERON:0001869!7.91e-07!32 | |ontology_enrichment_uberon=UBERON:0001474!3.35e-33!86;UBERON:0002371!1.20e-32!80;UBERON:0002390!7.80e-28!102;UBERON:0003061!7.80e-28!102;UBERON:0002405!1.06e-27!115;UBERON:0004765!1.29e-26!101;UBERON:0001434!1.29e-26!101;UBERON:0002193!2.45e-24!112;UBERON:0002204!6.96e-12!167;UBERON:0003081!7.27e-11!216;UBERON:0002619!5.20e-09!22;UBERON:0002020!7.19e-09!34;UBERON:0003528!7.19e-09!34;UBERON:0001950!2.65e-08!20;UBERON:0000956!1.03e-07!25;UBERON:0000203!1.03e-07!25;UBERON:0001049!1.17e-07!57;UBERON:0005068!1.17e-07!57;UBERON:0006241!1.17e-07!57;UBERON:0007135!1.17e-07!57;UBERON:0001872!3.35e-07!5;UBERON:0001869!7.91e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0002134;1.76e-09;1!UBERON:0005208;1.76e-09;1!UBERON:0004145;1.76e-09;1!UBERON:0005946;1.76e-09;1!UBERON:0005965;1.76e-09;1!UBERON:0002078;1.76e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.41e-44,76;UBERON:0001474,4.04e-41,82;UBERON:0004765,3.22e-37,90;UBERON:0002405,6.30e-36,93;UBERON:0002390,6.02e-34,98;UBERON:0003061,6.02e-34,98;UBERON:0001434,3.29e-33,100;UBERON:0002193,1.57e-30,108;UBERON:0002204,1.27e-18,167;UBERON:0003081,2.06e-16,203;UBERON:0002134,1.76e-09,1;UBERON:0005208,1.76e-09,1;UBERON:0005946,1.76e-09,1;UBERON:0005965,1.76e-09,1;UBERON:0002078,1.76e-09,1;UBERON:0000926,2.61e-09,315;UBERON:0004120,2.61e-09,315;UBERON:0006603,2.61e-09,315;UBERON:0002384,2.47e-07,371 | |||
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| ||
|short_description=p@chr19:2546698..2546709,- | |short_description=p@chr19:2546698..2546709,- | ||
}} | }} |
Latest revision as of 05:56, 26 July 2015
Short description: | p@chr19:2546698..2546709, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:2546698..2546709, - |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.00e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.00e-54 | 42 |
defensive cell | 4.79e-53 | 48 |
phagocyte | 4.79e-53 | 48 |
myeloid lineage restricted progenitor cell | 1.04e-51 | 66 |
granulocyte monocyte progenitor cell | 6.70e-51 | 67 |
myeloid leukocyte | 3.40e-47 | 72 |
monopoietic cell | 7.49e-42 | 59 |
monocyte | 7.49e-42 | 59 |
monoblast | 7.49e-42 | 59 |
promonocyte | 7.49e-42 | 59 |
macrophage dendritic cell progenitor | 2.09e-40 | 61 |
myeloid cell | 1.57e-30 | 108 |
common myeloid progenitor | 1.57e-30 | 108 |
hematopoietic lineage restricted progenitor cell | 3.58e-27 | 120 |
leukocyte | 1.32e-23 | 136 |
nongranular leukocyte | 3.46e-20 | 115 |
hematopoietic oligopotent progenitor cell | 1.94e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.94e-19 | 161 |
hematopoietic stem cell | 1.72e-18 | 168 |
hematopoietic cell | 2.21e-17 | 177 |
mast cell | 2.97e-16 | 5 |
basophil mast progenitor cell | 2.97e-16 | 5 |
endocrine cell | 2.93e-09 | 9 |
intermediate monocyte | 6.68e-09 | 9 |
CD14-positive, CD16-positive monocyte | 6.68e-09 | 9 |
mesenchymal cell | 7.23e-08 | 354 |
connective tissue cell | 1.21e-07 | 361 |
motile cell | 7.57e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.41e-44 | 76 |
bone element | 4.04e-41 | 82 |
skeletal element | 3.22e-37 | 90 |
immune system | 6.30e-36 | 93 |
hematopoietic system | 6.02e-34 | 98 |
blood island | 6.02e-34 | 98 |
skeletal system | 3.29e-33 | 100 |
hemolymphoid system | 1.57e-30 | 108 |
musculoskeletal system | 1.27e-18 | 167 |
lateral plate mesoderm | 2.06e-16 | 203 |
tricuspid valve | 1.76e-09 | 1 |
right atrium valve | 1.76e-09 | 1 |
outflow tract of atrium | 1.76e-09 | 1 |
outflow part of right atrium | 1.76e-09 | 1 |
right cardiac atrium | 1.76e-09 | 1 |
mesoderm | 2.61e-09 | 315 |
mesoderm-derived structure | 2.61e-09 | 315 |
presumptive mesoderm | 2.61e-09 | 315 |
connective tissue | 2.47e-07 | 371 |