FFCP PHASE1:Hg19::chr19:54062279..54062292,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54062279..54062292,+ | |||
|coexpression_cluster_id=C437 | |||
|description=CAGE_peak_at_chr19:54062279..54062292,+ | |description=CAGE_peak_at_chr19:54062279..54062292,+ | ||
|id=chr19:54062279..54062292,+ | |id=chr19:54062279..54062292,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.46e-09!140;CL:0002087!1.62e-08!119;CL:0000624!1.85e-08!6;CL:0002031!3.67e-08!124 | |ontology_enrichment_celltype=CL:0000738!1.46e-09!140;CL:0002087!1.62e-08!119;CL:0000624!1.85e-08!6;CL:0002031!3.67e-08!124 | ||
|ontology_enrichment_celltype_v019=CL:0000624;1.61e-22;6!CL:0000791;3.53e-18;18!CL:0000789;3.53e-18;18!CL:0002419;3.53e-18;18!CL:0000623;5.53e-17;3!CL:0000084;9.97e-13;25!CL:0000815;2.16e-11;2!CL:0000792;2.16e-11;2!CL:0002677;2.16e-11;2!CL:0000542;6.98e-10;53!CL:0000226;5.59e-08;3!CL:0000842;5.59e-08;3!CL:0000898;7.13e-08;3!CL:0002087;6.39e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.36e-22,6;CL:0002087,6.02e-19,115;CL:0000791,3.12e-18,18;CL:0000789,3.12e-18,18;CL:0002420,3.12e-18,18;CL:0002419,3.12e-18,18;CL:0000790,3.12e-18,18;CL:0000838,2.06e-17,52;CL:0000623,4.48e-17,3;CL:0000825,4.48e-17,3;CL:0000542,5.01e-17,53;CL:0000051,5.01e-17,53;CL:0000738,7.17e-17,136;CL:0002031,3.22e-16,120;CL:0000084,9.15e-13,25;CL:0000827,9.15e-13,25;CL:0000037,1.13e-12,168;CL:0000988,9.16e-12,177;CL:0000815,1.67e-11,2;CL:0000792,1.67e-11,2;CL:0002677,1.67e-11,2;CL:0002032,7.01e-11,161;CL:0000837,7.01e-11,161;CL:0000898,6.00e-08,3;CL:0000226,7.14e-08,3;CL:0000842,7.14e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.53e-18;18!CL:0000051;6.98e-10;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.70e-12!115;UBERON:0001049!4.47e-08!57;UBERON:0005068!4.47e-08!57;UBERON:0006241!4.47e-08!57;UBERON:0007135!4.47e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;6.09e-11;2!UBERON:0003978;1.41e-07;3!UBERON:0000946;1.41e-07;3!UBERON:0001894;4.60e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,4.49e-11,2;UBERON:0003978,1.15e-07,3;UBERON:0009751,1.15e-07,3;UBERON:0000946,1.15e-07,3;UBERON:0002523,1.15e-07,3;UBERON:0005983,1.15e-07,3;UBERON:0002165,1.15e-07,3;UBERON:0002062,1.15e-07,3;UBERON:0007280,1.15e-07,3;UBERON:0001894,4.51e-07,7;UBERON:0006222,4.51e-07,7 | |||
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| ||
|short_description=p@chr19:54062279..54062292,+ | |short_description=p@chr19:54062279..54062292,+ | ||
}} | }} |
Latest revision as of 17:00, 27 July 2015
Short description: | p@chr19:54062279..54062292, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54062279..54062292, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.36e-22 | 6 |
nongranular leukocyte | 6.02e-19 | 115 |
mature alpha-beta T cell | 3.12e-18 | 18 |
alpha-beta T cell | 3.12e-18 | 18 |
immature T cell | 3.12e-18 | 18 |
mature T cell | 3.12e-18 | 18 |
immature alpha-beta T cell | 3.12e-18 | 18 |
lymphoid lineage restricted progenitor cell | 2.06e-17 | 52 |
natural killer cell | 4.48e-17 | 3 |
pro-NK cell | 4.48e-17 | 3 |
lymphocyte | 5.01e-17 | 53 |
common lymphoid progenitor | 5.01e-17 | 53 |
leukocyte | 7.17e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 3.22e-16 | 120 |
T cell | 9.15e-13 | 25 |
pro-T cell | 9.15e-13 | 25 |
hematopoietic stem cell | 1.13e-12 | 168 |
hematopoietic cell | 9.16e-12 | 177 |
regulatory T cell | 1.67e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.67e-11 | 2 |
naive regulatory T cell | 1.67e-11 | 2 |
hematopoietic oligopotent progenitor cell | 7.01e-11 | 161 |
hematopoietic multipotent progenitor cell | 7.01e-11 | 161 |
naive T cell | 6.00e-08 | 3 |
single nucleate cell | 7.14e-08 | 3 |
mononuclear cell | 7.14e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 4.49e-11 | 2 |
valve | 1.15e-07 | 3 |
cardiac mesenchyme | 1.15e-07 | 3 |
cardial valve | 1.15e-07 | 3 |
tunica intima | 1.15e-07 | 3 |
heart layer | 1.15e-07 | 3 |
endocardium | 1.15e-07 | 3 |
endocardial cushion | 1.15e-07 | 3 |
presumptive endocardium | 1.15e-07 | 3 |
diencephalon | 4.51e-07 | 7 |
future diencephalon | 4.51e-07 | 7 |