FFCP PHASE1:Hg19::chr19:6592539..6592560,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:6592539..6592560,- | |||
|coexpression_cluster_id=C810 | |||
|description=CAGE_peak_at_chr19:6592539..6592560,- | |||
|id=chr19:6592539..6592560,- | |||
|ontology_enrichment_celltype=CL:0000542!1.37e-40!53;CL:0000051!1.37e-40!53;CL:0000838!3.52e-37!52;CL:0000945!3.81e-28!24;CL:0000826!3.81e-28!24;CL:0002087!2.24e-17!119;CL:0000988!2.85e-15!182;CL:0002031!9.65e-15!124;CL:0000738!3.92e-14!140;CL:0002032!1.17e-12!165;CL:0000837!1.17e-12!165;CL:0000037!5.83e-12!172;CL:0000566!5.83e-12!172;CL:0000080!5.64e-10!6;CL:0000623!1.34e-08!3;CL:0000825!1.34e-08!3;CL:0000084!4.85e-08!25;CL:0000827!4.85e-08!25;CL:0000946!1.54e-07!1;CL:0000786!1.54e-07!1;CL:0000980!1.54e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.53e-24;24!CL:0000946;8.05e-14;1!CL:0000786;8.05e-14;1!CL:0000542;4.70e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.42e-24,24;CL:0000826,1.42e-24,24;CL:0000542,4.38e-22,53;CL:0000051,4.38e-22,53;CL:0000838,2.88e-18,52;CL:0000946,7.55e-14,1;CL:0000786,7.55e-14,1;CL:0000980,7.55e-14,1;CL:0000988,3.59e-10,177;CL:0002087,1.90e-09,115;CL:0000738,8.30e-08,136;CL:0000785,1.45e-07,2;CL:0000955,1.45e-07,2;CL:0000818,1.45e-07,2;CL:0000954,1.45e-07,2;CL:0000816,1.45e-07,2;CL:0002031,2.90e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;4.70e-11;53!CL:0000954;1.50e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!1.19e-28!10;DOID:2531!6.76e-10!51;DOID:0060083!6.76e-10!51;DOID:0060060!1.74e-07!1;DOID:0060061!1.74e-07!1;DOID:8691!1.74e-07!1;DOID:630!1.97e-07!1;DOID:0050177!1.97e-07!1;DOID:0050427!1.97e-07!1;DOID:12603!2.37e-07!1;DOID:2355!2.52e-07!1;DOID:8552!5.84e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.61e-20;10!DOID:0060060;8.05e-14;1!DOID:0060061;8.05e-14;1!DOID:8691;8.05e-14;1!DOID:630;1.61e-13;1!DOID:0050177;1.61e-13;1!DOID:12603;1.61e-13;1!DOID:0050427;1.61e-13;1!DOID:2355;1.61e-13;1!DOID:74;2.12e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.96e-20,10;DOID:0060060,9.73e-14,1;DOID:0060061,9.73e-14,1;DOID:8691,9.73e-14,1;DOID:630,1.25e-13,1;DOID:0050177,1.25e-13,1;DOID:0050427,1.25e-13,1;DOID:12603,1.83e-13,1;DOID:2355,2.07e-13,1;DOID:74,2.40e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;5.29e-12;10!UBERON:0000178;3.51e-08;15!UBERON:0000179;3.51e-08;15!UBERON:0000463;3.51e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,5.39e-12,10;UBERON:0000358,5.39e-12,10;UBERON:0000307,5.39e-12,10;UBERON:0000091,5.39e-12,10;UBERON:0000087,5.39e-12,10;UBERON:0007010,5.39e-12,10;UBERON:0007806,5.39e-12,10;UBERON:0008780,5.39e-12,10;UBERON:0005728,5.39e-12,10;UBERON:0000178,3.56e-08,15;UBERON:0000179,3.56e-08,15;UBERON:0000463,3.56e-08,15 | |||
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|short_description=p@chr19:6592539..6592560,- | |||
}} | }} |
Latest revision as of 18:12, 27 July 2015
Short description: | p@chr19:6592539..6592560, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:6592539..6592560, - |
Coexpression cluster: | C810_b_cord_xeroderma_adult_plasma_splenic_hairy |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.42e-24 | 24 |
pro-B cell | 1.42e-24 | 24 |
lymphocyte | 4.38e-22 | 53 |
common lymphoid progenitor | 4.38e-22 | 53 |
lymphoid lineage restricted progenitor cell | 2.88e-18 | 52 |
antibody secreting cell | 7.55e-14 | 1 |
plasma cell | 7.55e-14 | 1 |
plasmablast | 7.55e-14 | 1 |
hematopoietic cell | 3.59e-10 | 177 |
nongranular leukocyte | 1.90e-09 | 115 |
leukocyte | 8.30e-08 | 136 |
mature B cell | 1.45e-07 | 2 |
pre-B-II cell | 1.45e-07 | 2 |
transitional stage B cell | 1.45e-07 | 2 |
small pre-B-II cell | 1.45e-07 | 2 |
immature B cell | 1.45e-07 | 2 |
hematopoietic lineage restricted progenitor cell | 2.90e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 5.39e-12 | 10 |
blastocyst | 5.39e-12 | 10 |
blastula | 5.39e-12 | 10 |
bilaminar disc | 5.39e-12 | 10 |
inner cell mass | 5.39e-12 | 10 |
cleaving embryo | 5.39e-12 | 10 |
connecting stalk | 5.39e-12 | 10 |
inner cell mass derived epiblast | 5.39e-12 | 10 |
extraembryonic mesoderm | 5.39e-12 | 10 |
blood | 3.56e-08 | 15 |
haemolymphatic fluid | 3.56e-08 | 15 |
organism substance | 3.56e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.96e-20 | 10 |
non-Hodgkin lymphoma | 9.73e-14 | 1 |
cutaneous T cell lymphoma | 9.73e-14 | 1 |
mycosis fungoides | 9.73e-14 | 1 |
genetic disease | 1.25e-13 | 1 |
monogenic disease | 1.25e-13 | 1 |
xeroderma pigmentosum | 1.25e-13 | 1 |
acute leukemia | 1.83e-13 | 1 |
anemia | 2.07e-13 | 1 |
hematopoietic system disease | 2.40e-07 | 2 |