FFCP PHASE1:Hg19::chr19:7861475..7861491,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:7861475..7861491,+ | |||
|coexpression_cluster_id=C3834 | |||
|description=CAGE_peak_at_chr19:7861475..7861491,+ | |description=CAGE_peak_at_chr19:7861475..7861491,+ | ||
|id=chr19:7861475..7861491,+ | |id=chr19:7861475..7861491,+ | ||
|ontology_enrichment_celltype=CL:0002543!9.92e-56!6;CL:0002139!8.70e-37!24;CL:0000115!4.30e-30!35;CL:0002618!8.12e-29!3;CL:0000071!1.33e-24!18;CL:0002546!1.33e-24!18;CL:0002078!1.35e-23!44;CL:0000213!7.91e-18!57;CL:0000215!7.91e-18!57;CL:0005020!3.94e-14!6;CL:0002138!3.94e-14!6;CL:0005022!3.94e-14!6;CL:0000222!9.45e-13!119 | |ontology_enrichment_celltype=CL:0002543!9.92e-56!6;CL:0002139!8.70e-37!24;CL:0000115!4.30e-30!35;CL:0002618!8.12e-29!3;CL:0000071!1.33e-24!18;CL:0002546!1.33e-24!18;CL:0002078!1.35e-23!44;CL:0000213!7.91e-18!57;CL:0000215!7.91e-18!57;CL:0005020!3.94e-14!6;CL:0002138!3.94e-14!6;CL:0005022!3.94e-14!6;CL:0000222!9.45e-13!119 | ||
|ontology_enrichment_celltype_v019=CL:0002543;2.59e-118;6!CL:0002618;4.03e-60;3!CL:0002139;3.56e-40;24!CL:0000071;1.25e-39;18!CL:0000115;8.69e-27;36!CL:0002078;2.83e-15;45!CL:0000213;6.75e-14;58!CL:0000215;6.75e-14;58!CL:0002262;2.73e-11;2!CL:1000398;2.73e-11;2!CL:0000076;1.77e-09;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002543,2.12e-118,6;CL:0002618,3.65e-60,3;CL:0002139,3.56e-40,24;CL:0000071,1.17e-39,18;CL:0002546,1.17e-39,18;CL:0000115,7.18e-35,36;CL:0002078,7.20e-28,45;CL:0000213,1.40e-21,58;CL:0000215,1.40e-21,58;CL:0000076,2.39e-11,63;CL:0002262,2.73e-11,2;CL:1000398,2.73e-11,2;CL:0000222,3.57e-10,121 | |||
|ontology_enrichment_development_v019=CL:0002546;1.25e-39;18!UBERON:0003124;5.16e-21;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001638!4.52e-37!9;UBERON:0003920!4.52e-37!9;UBERON:0004582!4.52e-37!9;UBERON:0001986!1.33e-24!18;UBERON:0004638!1.33e-24!18;UBERON:0004852!1.33e-24!18;UBERON:0000055!1.01e-23!69;UBERON:0002049!1.97e-20!79;UBERON:0007798!1.97e-20!79;UBERON:0000487!5.24e-20!22;UBERON:0002066!1.49e-17!5;UBERON:0006914!1.60e-17!25;UBERON:0001981!7.27e-17!60;UBERON:0007500!7.27e-17!60;UBERON:0004537!7.27e-17!60;UBERON:0006965!7.27e-17!60;UBERON:0004535!5.09e-14!110;UBERON:0004872!7.26e-14!84;UBERON:0001009!1.38e-13!113;UBERON:0001473!9.73e-11!8;UBERON:0004536!9.73e-11!8;UBERON:0006558!9.73e-11!8;UBERON:0003914!2.99e-09!118;UBERON:0002465!1.08e-08!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001638;5.29e-79;9!UBERON:0003920;5.29e-79;9!UBERON:0004582;5.29e-79;9!UBERON:0004638;1.25e-39;18!UBERON:0001986;1.25e-39;18!UBERON:0004852;1.25e-39;18!UBERON:0002066;1.89e-36;5!UBERON:0000487;1.87e-32;22!UBERON:0006914;1.41e-28;25!UBERON:0010260;1.28e-20;9!UBERON:0000490;3.41e-18;33!UBERON:0001281;2.73e-11;2!UBERON:0003497;2.73e-11;2!UBERON:0003909;2.73e-11;2!UBERON:0003835;2.73e-11;2!UBERON:0000055;4.47e-11;65!UBERON:0007500;1.68e-09;56!UBERON:0001981;1.68e-09;56!UBERON:0004537;1.68e-09;56!UBERON:0003914;1.40e-08;74!UBERON:0001280;5.93e-08;3!UBERON:0004647;5.93e-08;3!UBERON:0002049;8.24e-08;75!UBERON:0007798;8.24e-08;75!UBERON:0000025;3.33e-07;93!UBERON:0001009;4.22e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,4.63e-79,9;UBERON:0003920,4.63e-79,9;UBERON:0004582,4.63e-79,9;UBERON:0004638,1.17e-39,18;UBERON:0001986,1.17e-39,18;UBERON:0004852,1.17e-39,18;UBERON:0002066,1.78e-36,5;UBERON:0000487,1.77e-32,22;UBERON:0006914,1.35e-28,25;UBERON:0010260,1.24e-20,9;UBERON:0000055,2.27e-18,68;UBERON:0007500,2.40e-16,59;UBERON:0001981,2.40e-16,59;UBERON:0004537,2.40e-16,59;UBERON:0006965,2.40e-16,59;UBERON:0002049,5.59e-16,78;UBERON:0007798,5.59e-16,78;UBERON:0004872,5.05e-15,83;UBERON:0004535,2.45e-11,109;UBERON:0001281,2.73e-11,2;UBERON:0003497,2.73e-11,2;UBERON:0003909,2.73e-11,2;UBERON:0003835,2.73e-11,2;UBERON:0001009,5.05e-11,112;UBERON:0003914,4.10e-08,117;UBERON:0001280,5.93e-08,3;UBERON:0004647,5.93e-08,3;UBERON:0005171,5.93e-08,3 | |||
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|short_description=p@chr19:7861475..7861491,+ | |short_description=p@chr19:7861475..7861491,+ | ||
}} | }} |
Latest revision as of 18:32, 27 July 2015
Short description: | p@chr19:7861475..7861491, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:7861475..7861491, + |
Coexpression cluster: | C3834_Endothelial_Hepatic_Renal_Lymphatic_mature_lung_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 2.12e-118 | 6 |
endothelial cell of umbilical vein | 3.65e-60 | 3 |
endothelial cell of vascular tree | 3.56e-40 | 24 |
blood vessel endothelial cell | 1.17e-39 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.17e-39 | 18 |
endothelial cell | 7.18e-35 | 36 |
meso-epithelial cell | 7.20e-28 | 45 |
lining cell | 1.40e-21 | 58 |
barrier cell | 1.40e-21 | 58 |
squamous epithelial cell | 2.39e-11 | 63 |
endothelial cell of sinusoid | 2.73e-11 | 2 |
endothelial cell of hepatic sinusoid | 2.73e-11 | 2 |
mesodermal cell | 3.57e-10 | 121 |
Ontology term | p-value | n |
---|---|---|
vein | 4.63e-79 | 9 |
venous blood vessel | 4.63e-79 | 9 |
venous system | 4.63e-79 | 9 |
blood vessel endothelium | 1.17e-39 | 18 |
endothelium | 1.17e-39 | 18 |
cardiovascular system endothelium | 1.17e-39 | 18 |
umbilical vein | 1.78e-36 | 5 |
simple squamous epithelium | 1.77e-32 | 22 |
squamous epithelium | 1.35e-28 | 25 |
umbilical blood vessel | 1.24e-20 | 9 |
vessel | 2.27e-18 | 68 |
epithelial tube open at both ends | 2.40e-16 | 59 |
blood vessel | 2.40e-16 | 59 |
blood vasculature | 2.40e-16 | 59 |
vascular cord | 2.40e-16 | 59 |
vasculature | 5.59e-16 | 78 |
vascular system | 5.59e-16 | 78 |
splanchnic layer of lateral plate mesoderm | 5.05e-15 | 83 |
cardiovascular system | 2.45e-11 | 109 |
hepatic sinusoid | 2.73e-11 | 2 |
abdomen blood vessel | 2.73e-11 | 2 |
sinusoid | 2.73e-11 | 2 |
abdominal segment blood vessel | 2.73e-11 | 2 |
circulatory system | 5.05e-11 | 112 |
epithelial tube | 4.10e-08 | 117 |
liver parenchyma | 5.93e-08 | 3 |
liver lobule | 5.93e-08 | 3 |
hepatic duct | 5.93e-08 | 3 |