FFCP PHASE1:Hg19::chr1:98518880..98518891,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:98518880..98518891,+ | |||
|coexpression_cluster_id=C1861 | |||
|description=CAGE_peak_at_chr1:98518880..98518891,+ | |description=CAGE_peak_at_chr1:98518880..98518891,+ | ||
|id=chr1:98518880..98518891,+ | |id=chr1:98518880..98518891,+ | ||
|ontology_enrichment_celltype=CL:0000128!2.28e-24!7;CL:0000126!2.28e-24!7;CL:0000127!2.28e-24!7;CL:0002453!2.28e-24!7;CL:0002319!3.62e-19!25;CL:0000243!8.56e-17!15;CL:0000125!8.56e-17!15;CL:0000030!8.56e-17!15;CL:0000339!8.56e-17!15;CL:0000133!3.24e-16!59;CL:0002605!8.94e-16!3;CL:0000064!2.97e-15!3;CL:0005012!2.97e-15!3;CL:0000067!2.97e-15!3;CL:0002304!2.97e-15!3;CL:0000095!6.91e-15!17;CL:0000123!6.91e-15!17;CL:0000221!9.64e-15!71;CL:0000333!4.39e-09!41;CL:0002573!3.54e-07!2;CL:0002603!7.36e-07!3 | |ontology_enrichment_celltype=CL:0000128!2.28e-24!7;CL:0000126!2.28e-24!7;CL:0000127!2.28e-24!7;CL:0002453!2.28e-24!7;CL:0002319!3.62e-19!25;CL:0000243!8.56e-17!15;CL:0000125!8.56e-17!15;CL:0000030!8.56e-17!15;CL:0000339!8.56e-17!15;CL:0000133!3.24e-16!59;CL:0002605!8.94e-16!3;CL:0000064!2.97e-15!3;CL:0005012!2.97e-15!3;CL:0000067!2.97e-15!3;CL:0002304!2.97e-15!3;CL:0000095!6.91e-15!17;CL:0000123!6.91e-15!17;CL:0000221!9.64e-15!71;CL:0000333!4.39e-09!41;CL:0002573!3.54e-07!2;CL:0002603!7.36e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002605;3.16e-55;3!CL:0000128;5.52e-42;7!CL:0000126;5.52e-42;7!CL:0000127;5.52e-42;7!CL:0000047;1.70e-36;2!CL:0000064;6.21e-25;3!CL:0000067;6.21e-25;3!CL:0005012;6.21e-25;3!CL:0002304;6.21e-25;3!CL:0002319;4.93e-24;25!CL:0000243;1.40e-17;15!CL:0000125;1.40e-17;15!CL:0000095;8.97e-16;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.88e-55,3;CL:0000128,5.24e-42,7;CL:0000126,5.24e-42,7;CL:0000127,5.24e-42,7;CL:0002453,5.24e-42,7;CL:0000064,7.02e-25,3;CL:0000067,7.02e-25,3;CL:0005012,7.02e-25,3;CL:0002304,7.02e-25,3;CL:0002319,4.28e-24,25;CL:0000133,1.44e-18,59;CL:0000243,1.37e-17,15;CL:0000125,1.37e-17,15;CL:0000030,1.37e-17,15;CL:0000339,1.37e-17,15;CL:0000095,8.80e-16,17;CL:0000123,8.80e-16,17;CL:0000221,3.11e-15,72;CL:0000047,5.80e-10,8;CL:0000333,3.82e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.40e-17;15!CL:0000133;4.83e-16;59!CL:0000221;2.13e-09;72 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4074;2.85e-10;2!DOID:4905;2.85e-10;2!DOID:3498;2.85e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4074,3.27e-10,2;DOID:4905,3.27e-10,2;DOID:3498,3.27e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001778!2.97e-15!3;UBERON:0001775!2.97e-15!3;UBERON:0000488!1.47e-11!4;UBERON:0000073!1.68e-11!94;UBERON:0001016!1.68e-11!94;UBERON:0003075!3.26e-10!86;UBERON:0007284!3.26e-10!86;UBERON:0002346!1.31e-09!90;UBERON:0001017!2.86e-09!82;UBERON:0004121!3.94e-09!169;UBERON:0000924!8.30e-09!173;UBERON:0006601!8.30e-09!173;UBERON:0005743!1.06e-08!86;UBERON:0000956!3.55e-08!25;UBERON:0000203!3.55e-08!25;UBERON:0002203!7.67e-08!6;UBERON:0001768!7.67e-08!6;UBERON:0001049!1.32e-07!57;UBERON:0005068!1.32e-07!57;UBERON:0006241!1.32e-07!57;UBERON:0007135!1.32e-07!57;UBERON:0003056!3.72e-07!61;UBERON:0007625!4.36e-07!11;UBERON:0000033!5.74e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;6.21e-25;3!UBERON:0001775;6.21e-25;3!UBERON:0000488;5.64e-19;4!UBERON:0002203;5.42e-13;6!UBERON:0001768;5.42e-13;6!UBERON:0002200;5.42e-13;6!UBERON:0000956;1.47e-11;25!UBERON:0000203;1.47e-11;25!UBERON:0002791;2.89e-09;32!UBERON:0001869;2.89e-09;32!UBERON:0003528;7.29e-09;34!UBERON:0002020;7.29e-09;34!UBERON:0007625;1.67e-07;11!UBERON:0006876;1.67e-07;11!UBERON:0001893;2.81e-07;34!UBERON:0002114;2.88e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,7.02e-25,3;UBERON:0001775,7.02e-25,3;UBERON:0000488,6.18e-19,4;UBERON:0002203,5.76e-13,6;UBERON:0001768,5.76e-13,6;UBERON:0002200,5.76e-13,6;UBERON:0000956,1.55e-11,25;UBERON:0000203,1.55e-11,25;UBERON:0001017,2.18e-10,81;UBERON:0003056,2.21e-10,61;UBERON:0001016,2.46e-09,89;UBERON:0002791,3.73e-09,32;UBERON:0001869,3.73e-09,32;UBERON:0003528,1.20e-08,34;UBERON:0002020,1.20e-08,34;UBERON:0001893,1.20e-08,34;UBERON:0004121,8.01e-08,171;UBERON:0000924,8.01e-08,171;UBERON:0006601,8.01e-08,171;UBERON:0003075,1.05e-07,82;UBERON:0007284,1.05e-07,82;UBERON:0007625,1.73e-07,11;UBERON:0006876,1.73e-07,11;UBERON:0002346,2.42e-07,86;UBERON:0002114,2.63e-07,2;UBERON:0002780,2.99e-07,41;UBERON:0001890,2.99e-07,41;UBERON:0003080,2.99e-07,41;UBERON:0006240,2.99e-07,41 | |||
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|short_description=p@chr1:98518880..98518891,+ | |short_description=p@chr1:98518880..98518891,+ | ||
}} | }} |
Latest revision as of 11:43, 28 July 2015
Short description: | p@chr1:98518880..98518891, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:98518880..98518891, + |
Coexpression cluster: | C1861_astrocytoma_Astrocyte_Ciliary_adrenal_Neural_ductal_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.88e-55 | 3 |
oligodendrocyte | 5.24e-42 | 7 |
macroglial cell | 5.24e-42 | 7 |
astrocyte | 5.24e-42 | 7 |
oligodendrocyte precursor cell | 5.24e-42 | 7 |
ciliated cell | 7.02e-25 | 3 |
ciliated epithelial cell | 7.02e-25 | 3 |
multi-ciliated epithelial cell | 7.02e-25 | 3 |
non-pigmented ciliary epithelial cell | 7.02e-25 | 3 |
neural cell | 4.28e-24 | 25 |
neurectodermal cell | 1.44e-18 | 59 |
glial cell (sensu Vertebrata) | 1.37e-17 | 15 |
glial cell | 1.37e-17 | 15 |
glioblast | 1.37e-17 | 15 |
glioblast (sensu Vertebrata) | 1.37e-17 | 15 |
neuron associated cell | 8.80e-16 | 17 |
neuron associated cell (sensu Vertebrata) | 8.80e-16 | 17 |
ectodermal cell | 3.11e-15 | 72 |
neuronal stem cell | 5.80e-10 | 8 |
migratory neural crest cell | 3.82e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 7.02e-25 | 3 |
ciliary body | 7.02e-25 | 3 |
atypical epithelium | 6.18e-19 | 4 |
vasculature of eye | 5.76e-13 | 6 |
uvea | 5.76e-13 | 6 |
vasculature of head | 5.76e-13 | 6 |
cerebral cortex | 1.55e-11 | 25 |
pallium | 1.55e-11 | 25 |
central nervous system | 2.18e-10 | 81 |
pre-chordal neural plate | 2.21e-10 | 61 |
nervous system | 2.46e-09 | 89 |
regional part of telencephalon | 3.73e-09 | 32 |
cerebral hemisphere | 3.73e-09 | 32 |
brain grey matter | 1.20e-08 | 34 |
gray matter | 1.20e-08 | 34 |
telencephalon | 1.20e-08 | 34 |
ectoderm-derived structure | 8.01e-08 | 171 |
ectoderm | 8.01e-08 | 171 |
presumptive ectoderm | 8.01e-08 | 171 |
neural plate | 1.05e-07 | 82 |
presumptive neural plate | 1.05e-07 | 82 |
pigment epithelium of eye | 1.73e-07 | 11 |
vasculature of organ | 1.73e-07 | 11 |
neurectoderm | 2.42e-07 | 86 |
duodenum | 2.63e-07 | 2 |
regional part of forebrain | 2.99e-07 | 41 |
forebrain | 2.99e-07 | 41 |
anterior neural tube | 2.99e-07 | 41 |
future forebrain | 2.99e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
pancreas adenocarcinoma | 3.27e-10 | 2 |
pancreatic carcinoma | 3.27e-10 | 2 |
pancreatic ductal adenocarcinoma | 3.27e-10 | 2 |