FFCP PHASE1:Hg19::chr20:49983423..49983431,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:49983423..49983431,+ | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr20:49983423..49983431,+ | |||
|id=chr20:49983423..49983431,+ | |||
|ontology_enrichment_celltype=CL:0002548!6.97e-08!6;CL:0002166!2.06e-07!3;CL:0000708!4.01e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000322;9.45e-18;3!CL:0000306;1.13e-13;4!CL:0002222;1.13e-13;4!CL:0002224;1.13e-13;4!CL:0002548;1.44e-09;6!CL:0000128;1.89e-08;7!CL:0000126;1.89e-08;7!CL:0000127;1.89e-08;7!CL:0002202;8.37e-07;9!CL:0002632;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,9.46e-18,3;CL:0000306,1.00e-13,4;CL:0002222,1.00e-13,4;CL:0002224,1.00e-13,4;CL:0002548,1.57e-09,6;CL:0000128,1.89e-08,7;CL:0000126,1.89e-08,7;CL:0000127,1.89e-08,7;CL:0002453,1.89e-08,7;CL:0002202,8.37e-07,9;CL:0002632,8.37e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;7.14e-26;2!DOID:3908;3.26e-11;5!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,7.14e-26,2;DOID:3908,3.26e-11,5;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0003210!4.01e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.14e-26;2!UBERON:0002173;7.14e-26;2!UBERON:0002186;7.14e-26;2!UBERON:0004821;9.45e-18;3!UBERON:0007499;9.45e-18;3!UBERON:0003215;9.45e-18;3!UBERON:0010368;9.45e-18;3!UBERON:0009911;9.45e-18;3!UBERON:0002299;9.45e-18;3!UBERON:0006524;9.45e-18;3!UBERON:0008874;9.45e-18;3!UBERON:0002169;9.45e-18;3!UBERON:0004894;9.45e-18;3!UBERON:0010077;1.13e-13;4!UBERON:0005389;1.13e-13;4!UBERON:0000484;1.13e-13;4!UBERON:0009856;1.13e-13;4!UBERON:0000965;1.13e-13;4!UBERON:0001803;1.13e-13;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,7.14e-26,2;UBERON:0002173,7.14e-26,2;UBERON:0002186,7.14e-26,2;UBERON:0004821,9.46e-18,3;UBERON:0003215,9.46e-18,3;UBERON:0010368,9.46e-18,3;UBERON:0009911,9.46e-18,3;UBERON:0002299,9.46e-18,3;UBERON:0006524,9.46e-18,3;UBERON:0008874,9.46e-18,3;UBERON:0002169,9.46e-18,3;UBERON:0004894,9.46e-18,3;UBERON:0010077,1.00e-13,4;UBERON:0005389,1.00e-13,4;UBERON:0000484,1.00e-13,4;UBERON:0002546,1.00e-13,4;UBERON:0000965,1.00e-13,4;UBERON:0001803,1.00e-13,4;UBERON:0003073,1.00e-13,4;UBERON:0005426,1.00e-13,4;UBERON:0000076,1.59e-07,8 | |||
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|short_description=p@chr20:49983423..49983431,+ | |||
}} | }} |
Latest revision as of 15:19, 28 July 2015
Short description: | p@chr20:49983423..49983431, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:49983423..49983431, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 9.46e-18 | 3 |
crystallin accumulating cell | 1.00e-13 | 4 |
vertebrate lens cell | 1.00e-13 | 4 |
lens epithelial cell | 1.00e-13 | 4 |
cardiac fibroblast | 1.57e-09 | 6 |
oligodendrocyte | 1.89e-08 | 7 |
macroglial cell | 1.89e-08 | 7 |
astrocyte | 1.89e-08 | 7 |
oligodendrocyte precursor cell | 1.89e-08 | 7 |
epithelial cell of tracheobronchial tree | 8.37e-07 | 9 |
epithelial cell of lower respiratory tract | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 7.14e-26 | 2 |
alveolar duct | 7.14e-26 | 2 |
bronchiole | 7.14e-26 | 2 |
pulmonary alveolus epithelium | 9.46e-18 | 3 |
alveolus | 9.46e-18 | 3 |
pulmonary lobule | 9.46e-18 | 3 |
lobule | 9.46e-18 | 3 |
alveolus of lung | 9.46e-18 | 3 |
alveolar system | 9.46e-18 | 3 |
pulmonary acinus | 9.46e-18 | 3 |
alveolar sac | 9.46e-18 | 3 |
alveolar wall | 9.46e-18 | 3 |
cuboidal epithelium | 1.00e-13 | 4 |
transparent eye structure | 1.00e-13 | 4 |
simple cuboidal epithelium | 1.00e-13 | 4 |
cranial placode | 1.00e-13 | 4 |
lens of camera-type eye | 1.00e-13 | 4 |
epithelium of lens | 1.00e-13 | 4 |
lens placode | 1.00e-13 | 4 |
lens vesicle | 1.00e-13 | 4 |
external ectoderm | 1.59e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 7.14e-26 | 2 |
non-small cell lung carcinoma | 3.26e-11 | 5 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
lung carcinoma | 8.37e-07 | 9 |