FFCP PHASE1:Hg19::chr2:130201021..130201043,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:130201021..130201043,-
|short_description=p@chr2:130201021..130201043,-
|description=CAGE_peak_at_chr2:130201021..130201043,-
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:130201021..130201043,- | |||
|description=CAGE_peak_at_chr2:130201021..130201043,- | |||
|id=chr2:130201021..130201043,- | |||
|ontology_enrichment_celltype=CL:0000945!9.53e-07!24;CL:0000826!9.53e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.44e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,2.31e-15,3;CL:0000785,6.88e-11,2;CL:0000955,6.88e-11,2;CL:0000818,6.88e-11,2;CL:0000954,6.88e-11,2;CL:0000816,6.88e-11,2;CL:0000542,1.46e-08,53;CL:0000051,1.46e-08,53;CL:0000838,3.25e-07,52;CL:0000945,9.40e-07,24;CL:0000826,9.40e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000954;8.34e-11;2 | |||
|ontology_enrichment_disease=DOID:2531!2.72e-14!51;DOID:0060083!2.72e-14!51;DOID:1240!4.51e-09!39;DOID:0050686!1.84e-08!137;DOID:0060058!4.40e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.03e-12;10!DOID:2531;1.51e-10;51!DOID:0060083;1.51e-10;51!DOID:1240;3.81e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.04e-17,51;DOID:0060083,2.04e-17,51;DOID:0060058,3.14e-12,10;DOID:0050686,4.13e-10,137;DOID:1240,5.89e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0001049!8.23e-19!57;UBERON:0005068!8.23e-19!57;UBERON:0006241!8.23e-19!57;UBERON:0007135!8.23e-19!57;UBERON:0000955!3.22e-16!69;UBERON:0006238!3.22e-16!69;UBERON:0002616!3.52e-16!59;UBERON:0001017!6.98e-16!82;UBERON:0005743!1.58e-15!86;UBERON:0000073!6.10e-15!94;UBERON:0001016!6.10e-15!94;UBERON:0002780!2.58e-13!41;UBERON:0001890!2.58e-13!41;UBERON:0006240!2.58e-13!41;UBERON:0003075!7.83e-13!86;UBERON:0007284!7.83e-13!86;UBERON:0003080!7.93e-13!42;UBERON:0002346!9.60e-13!90;UBERON:0002020!1.00e-11!34;UBERON:0003528!1.00e-11!34;UBERON:0007023!1.81e-11!115;UBERON:0001893!2.09e-11!34;UBERON:0001869!3.02e-11!32;UBERON:0002791!1.27e-10!33;UBERON:0002308!3.01e-10!9;UBERON:0000125!3.01e-10!9;UBERON:0000033!2.44e-08!123;UBERON:0003056!3.93e-08!61;UBERON:0000153!4.51e-08!129;UBERON:0007811!4.51e-08!129;UBERON:0002420!4.69e-08!9;UBERON:0007245!4.69e-08!9;UBERON:0010009!4.69e-08!9;UBERON:0010011!4.69e-08!9;UBERON:0000454!4.69e-08!9;UBERON:0009663!6.53e-08!7;UBERON:0003076!2.09e-07!15;UBERON:0003057!2.09e-07!15;UBERON:0000924!2.87e-07!173;UBERON:0006601!2.87e-07!173;UBERON:0004121!3.56e-07!169;UBERON:0000369!4.94e-07!4;UBERON:0002435!4.94e-07!4;UBERON:0000204!4.94e-07!4;UBERON:0010082!4.94e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002420;3.04e-13;9!UBERON:0007245;3.04e-13;9!UBERON:0010009;3.04e-13;9!UBERON:0010011;3.04e-13;9!UBERON:0000454;3.04e-13;9!UBERON:0000125;5.47e-13;9!UBERON:0002308;5.47e-13;9!UBERON:0000369;1.37e-11;4!UBERON:0002435;1.37e-11;4!UBERON:0000204;1.37e-11;4!UBERON:0009663;3.77e-11;7!UBERON:0005383;1.06e-07;3!UBERON:0005382;1.06e-07;3!UBERON:0000988;5.89e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,2.26e-13,9;UBERON:0007245,2.26e-13,9;UBERON:0010009,2.26e-13,9;UBERON:0010011,2.26e-13,9;UBERON:0000454,2.26e-13,9;UBERON:0000125,4.77e-13,9;UBERON:0002308,4.77e-13,9;UBERON:0000369,8.47e-12,4;UBERON:0002435,8.47e-12,4;UBERON:0000204,8.47e-12,4;UBERON:0010082,8.47e-12,4;UBERON:0009663,2.78e-11,7;UBERON:0005383,9.43e-08,3;UBERON:0005382,9.43e-08,3;UBERON:0000988,6.09e-07,3 | |||
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|short_description=p@chr2:130201021..130201043,- | |||
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Latest revision as of 00:15, 29 July 2015
Short description: | p@chr2:130201021..130201043, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:130201021..130201043, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 2.31e-15 | 3 |
mature B cell | 6.88e-11 | 2 |
pre-B-II cell | 6.88e-11 | 2 |
transitional stage B cell | 6.88e-11 | 2 |
small pre-B-II cell | 6.88e-11 | 2 |
immature B cell | 6.88e-11 | 2 |
lymphocyte | 1.46e-08 | 53 |
common lymphoid progenitor | 1.46e-08 | 53 |
lymphoid lineage restricted progenitor cell | 3.25e-07 | 52 |
lymphocyte of B lineage | 9.40e-07 | 24 |
pro-B cell | 9.40e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
basal ganglion | 2.26e-13 | 9 |
nuclear complex of neuraxis | 2.26e-13 | 9 |
aggregate regional part of brain | 2.26e-13 | 9 |
collection of basal ganglia | 2.26e-13 | 9 |
cerebral subcortex | 2.26e-13 | 9 |
neural nucleus | 4.77e-13 | 9 |
nucleus of brain | 4.77e-13 | 9 |
corpus striatum | 8.47e-12 | 4 |
striatum | 8.47e-12 | 4 |
ventral part of telencephalon | 8.47e-12 | 4 |
future corpus striatum | 8.47e-12 | 4 |
telencephalic nucleus | 2.78e-11 | 7 |
caudate-putamen | 9.43e-08 | 3 |
dorsal striatum | 9.43e-08 | 3 |
pons | 6.09e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.04e-17 | 51 |
immune system cancer | 2.04e-17 | 51 |
lymphoma | 3.14e-12 | 10 |
organ system cancer | 4.13e-10 | 137 |
leukemia | 5.89e-10 | 39 |