FFCP PHASE1:Hg19::chr3:100557300..100557309,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:100557300..100557309,- to FFCP PHASE1:Hg19::chr3:100557300..100557309,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:100557300..100557309,- | |||
|coexpression_cluster_id=C404 | |||
|description=CAGE_peak_at_chr3:100557300..100557309,- | |||
|id=chr3:100557300..100557309,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.30e-16;9!CL:0000447;2.30e-16;9!CL:0000327;5.56e-15;15!CL:0000214;6.16e-13;3!CL:0002591;9.37e-11;1!CL:0000569;3.87e-10;4!CL:0000499;5.80e-08;28!CL:0000138;4.87e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.65e-16,9;CL:0000447,2.65e-16,9;CL:0000327,7.38e-15,15;CL:0000214,6.17e-13,3;CL:0002591,1.19e-10,1;CL:0000569,3.46e-10,4;CL:0000011,3.46e-10,4;CL:0000499,6.70e-08,28;CL:0000058,5.42e-07,6;CL:0000138,5.42e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0004874;2.50e-10;1!CL:0000011;3.87e-10;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4235;9.37e-11;1!DOID:2513;2.50e-10;1!DOID:3571;2.50e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,8.95e-11,1;DOID:2513,2.50e-10,1;DOID:3571,4.33e-10,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;6.16e-13;3!UBERON:0007616;6.16e-13;3!UBERON:0002217;6.16e-13;3!UBERON:0002018;6.16e-13;3!UBERON:0000989;2.50e-10;1!UBERON:0002135;2.50e-10;1!UBERON:0007195;2.50e-10;1!UBERON:0008811;2.50e-10;1!UBERON:0000948;8.48e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,6.17e-13,3;UBERON:0007616,6.17e-13,3;UBERON:0002217,6.17e-13,3;UBERON:0002018,6.17e-13,3;UBERON:0000989,2.08e-10,1;UBERON:0008811,2.08e-10,1;UBERON:0006258,2.08e-10,1;UBERON:0005876,2.08e-10,1;UBERON:0004874,2.08e-10,1;UBERON:0002135,3.01e-10,1;UBERON:0007195,3.29e-10,1;UBERON:0000948,2.16e-09,24;UBERON:0005498,2.16e-09,24;UBERON:0004140,2.16e-09,24;UBERON:0009881,2.16e-09,24;UBERON:0004141,2.16e-09,24;UBERON:0003084,2.16e-09,24;UBERON:0007005,2.16e-09,24;UBERON:0004139,2.16e-09,24;UBERON:0004291,2.16e-09,24;UBERON:0007100,2.50e-08,27 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,2.75208386025565,0.795285947051099,0.486634870302636,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.379891534993739,3.57504788195691,0.286836620748814,0,0,0,1.48000529050296,0,0,0.163461903113459,0,0,0,0,0,0.597794722207204,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0.554128230968366,0,0.612975591598039,0.751190294532984,0.113432183160021,0.538168907066586,0,0.211931901159562,0.900273288253207,0,0.515281080091258,0.18611685633159,0,0,0,0,0.161646056818812,0.710019185033229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,2.31492756288305,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,1.73737568001095,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,1.87173775377726,0.535286966391485,0.788512075169673,0.585707074963566,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0.94443704049192,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,1.94970791705028,0,0,0,2.26016233240486,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,1.05553817648832,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.597743964753209,0,0,0.306806047506464,0,1.24415835064723,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,0.687481272035051,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,1.08599920350743,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0.378806010550178,0.251567901752575,0,1.83072054717539,2.26846385644859,0.310874401165561,0,0.159296767163702,0,0,2.90294345488599,0.265841714557995,0,0,0.761610424337591,0,0,0.107410557042488,0,0.398095888698616,0.800055529326307,0,0,0,0,0,0,0.453411851024545,0,0.244736704506468,0.895444205407437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0.20170506870352,0,0,0.49131575253029,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.556157009460346,0.078493092850514,0,0,0,0,0,0.428859265059938,0,0,0,0,0,0.6828739083758,0.691259661814092,0,0.473328002922261,0.170426809518315,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0.297046400327086,0,2.37897960562944,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0,0.924351257262837,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,0,0,0,0.112131862580613,0.0636471582781649,0.808468755832877,0,0.342233301085281,0,0,0,0,0.320182037633146,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20538905604795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,2.75208386025565,0.795285947051099,0.486634870302636,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.379891534993739,3.57504788195691,0.286836620748814,0,0,0,1.48000529050296,0,0,0.163461903113459,0,0,0,0,0,0.597794722207204,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0.554128230968366,0,0.612975591598039,0.751190294532984,0.113432183160021,0.538168907066586,0,0.211931901159562,0.900273288253207,0,0.515281080091258,0.18611685633159,0,0,0,0,0.161646056818812,0.710019185033229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,2.31492756288305,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,1.73737568001095,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,1.87173775377726,0.535286966391485,0.788512075169673,0.585707074963566,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0.94443704049192,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,1.94970791705028,0,0,0,2.26016233240486,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,1.05553817648832,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.597743964753209,0,0,0.306806047506464,0,1.24415835064723,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,0.687481272035051,0,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,1.08599920350743,0,0.326587360109409,0,0,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0.378806010550178,0.251567901752575,0,1.83072054717539,2.26846385644859,0.310874401165561,0,0.159296767163702,0,0,2.90294345488599,0.265841714557995,0,0,0.761610424337591,0,0,0.107410557042488,0,0.398095888698616,0.800055529326307,0,0,0,0,0,0,0.453411851024545,0,0.244736704506468,0.895444205407437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0.20170506870352,0,0,0.49131575253029,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.556157009460346,0.078493092850514,0,0,0,0,0,0.428859265059938,0,0,0,0,0,0.6828739083758,0.691259661814092,0,0.473328002922261,0.170426809518315,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0.297046400327086,0,2.37897960562944,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0,0.924351257262837,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,0,0,0,0.112131862580613,0.0636471582781649,0.808468755832877,0,0.342233301085281,0,0,0,0,0.320182037633146,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p@chr3:100557300..100557309,- | |||
}} | }} |
Latest revision as of 13:40, 29 July 2015
Short description: | p@chr3:100557300..100557309, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:100557300..100557309, - |
Coexpression cluster: | C404_Fibroblast_mesenchymal_Synoviocyte_Smooth_basal_mesodermal_Chondrocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.65e-16 | 9 |
carbohydrate secreting cell | 2.65e-16 | 9 |
extracellular matrix secreting cell | 7.38e-15 | 15 |
synovial cell | 6.17e-13 | 3 |
smooth muscle cell of the pulmonary artery | 1.19e-10 | 1 |
cardiac mesenchymal cell | 3.46e-10 | 4 |
migratory trunk neural crest cell | 3.46e-10 | 4 |
stromal cell | 6.70e-08 | 28 |
chondroblast | 5.42e-07 | 6 |
chondrocyte | 5.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 6.17e-13 | 3 |
layer of synovial tissue | 6.17e-13 | 3 |
synovial joint | 6.17e-13 | 3 |
synovial membrane of synovial joint | 6.17e-13 | 3 |
penis | 2.08e-10 | 1 |
intromittent organ | 2.08e-10 | 1 |
lateral plate mesenchyme | 2.08e-10 | 1 |
undifferentiated genital tubercle | 2.08e-10 | 1 |
somatopleure | 2.08e-10 | 1 |
mitral valve | 3.01e-10 | 1 |
stroma of bone marrow | 3.29e-10 | 1 |
heart | 2.16e-09 | 24 |
primitive heart tube | 2.16e-09 | 24 |
primary heart field | 2.16e-09 | 24 |
anterior lateral plate mesoderm | 2.16e-09 | 24 |
heart tube | 2.16e-09 | 24 |
heart primordium | 2.16e-09 | 24 |
cardiac mesoderm | 2.16e-09 | 24 |
cardiogenic plate | 2.16e-09 | 24 |
heart rudiment | 2.16e-09 | 24 |
primary circulatory organ | 2.50e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 8.95e-11 | 1 |
basal cell carcinoma | 2.50e-10 | 1 |
liver cancer | 4.33e-10 | 1 |