FFCP PHASE1:Hg19::chr3:13493495..13493517,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:13493495..13493517,+
|short_description=p@chr3:13493495..13493517,+
|description=CAGE_peak_at_chr3:13493495..13493517,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:13493495..13493517,+ | |||
|coexpression_cluster_id=C274 | |||
|description=CAGE_peak_at_chr3:13493495..13493517,+ | |||
|id=chr3:13493495..13493517,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.56e-44!45;CL:0002057!4.70e-40!42;CL:0000839!5.36e-38!70;CL:0000557!3.02e-37!71;CL:0002194!1.69e-35!63;CL:0000576!1.69e-35!63;CL:0000040!1.69e-35!63;CL:0000559!1.69e-35!63;CL:0002009!5.62e-34!65;CL:0000766!8.65e-34!76;CL:0002031!8.73e-28!124;CL:0000738!6.46e-27!140;CL:0002087!1.21e-25!119;CL:0000763!1.43e-23!112;CL:0000049!1.43e-23!112;CL:0000988!1.38e-21!182;CL:0000037!4.49e-21!172;CL:0000566!4.49e-21!172;CL:0002032!7.47e-21!165;CL:0000837!7.47e-21!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.12e-118;33!CL:0002057;7.12e-118;33!CL:0000473;3.13e-79;39!CL:0000234;3.13e-79;39!CL:0000576;1.86e-53;48!CL:0000766;3.92e-34;69!CL:0000763;6.60e-17;100!CL:0002087;5.91e-14;104!CL:0000097;8.10e-10;5!CL:0000738;1.16e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.06e-98,42;CL:0002057,2.06e-98,42;CL:0000473,2.32e-85,48;CL:0000234,2.32e-85,48;CL:0000839,3.75e-73,66;CL:0000557,5.54e-72,67;CL:0002194,4.44e-67,59;CL:0000576,4.44e-67,59;CL:0000040,4.44e-67,59;CL:0000559,4.44e-67,59;CL:0000766,1.29e-66,72;CL:0002009,1.02e-64,61;CL:0000763,1.73e-42,108;CL:0000049,1.73e-42,108;CL:0002031,3.05e-40,120;CL:0000738,8.99e-35,136;CL:0002087,3.55e-34,115;CL:0002032,2.20e-28,161;CL:0000837,2.20e-28,161;CL:0000037,6.22e-27,168;CL:0000988,3.11e-25,177;CL:0000097,9.73e-10,5;CL:0002028,9.73e-10,5;CL:0000134,2.74e-09,354;CL:0002320,5.61e-09,361;CL:0000219,1.18e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.70e-72;42!CL:0000049;8.48e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.44e-32!102;UBERON:0003061!8.44e-32!102;UBERON:0002371!2.44e-31!80;UBERON:0002193!1.18e-28!112;UBERON:0001474!4.22e-28!86;UBERON:0002405!6.27e-25!115;UBERON:0004765!9.81e-22!101;UBERON:0001434!9.81e-22!101;UBERON:0003081!6.35e-10!216;UBERON:0002204!1.71e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000996;9.66e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.01e-63,76;UBERON:0001474,8.10e-58,82;UBERON:0002405,1.09e-53,93;UBERON:0004765,3.60e-52,90;UBERON:0002390,1.19e-50,98;UBERON:0003061,1.19e-50,98;UBERON:0001434,2.29e-46,100;UBERON:0002193,2.11e-45,108;UBERON:0002204,2.83e-25,167;UBERON:0003081,3.60e-21,203;UBERON:0000926,2.57e-12,315;UBERON:0004120,2.57e-12,315;UBERON:0006603,2.57e-12,315;UBERON:0002384,1.49e-08,371;UBERON:0000996,9.67e-07,1 | |||
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| ||
|short_description=p@chr3:13493495..13493517,+ | |||
}} | }} |
Latest revision as of 16:07, 29 July 2015
Short description: | p@chr3:13493495..13493517, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:13493495..13493517, + |
Coexpression cluster: | C274_CD14_Mast_immature_Basophils_mature_vagina_Hepatocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.06e-98 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.06e-98 | 42 |
defensive cell | 2.32e-85 | 48 |
phagocyte | 2.32e-85 | 48 |
myeloid lineage restricted progenitor cell | 3.75e-73 | 66 |
granulocyte monocyte progenitor cell | 5.54e-72 | 67 |
monopoietic cell | 4.44e-67 | 59 |
monocyte | 4.44e-67 | 59 |
monoblast | 4.44e-67 | 59 |
promonocyte | 4.44e-67 | 59 |
myeloid leukocyte | 1.29e-66 | 72 |
macrophage dendritic cell progenitor | 1.02e-64 | 61 |
myeloid cell | 1.73e-42 | 108 |
common myeloid progenitor | 1.73e-42 | 108 |
hematopoietic lineage restricted progenitor cell | 3.05e-40 | 120 |
leukocyte | 8.99e-35 | 136 |
nongranular leukocyte | 3.55e-34 | 115 |
hematopoietic oligopotent progenitor cell | 2.20e-28 | 161 |
hematopoietic multipotent progenitor cell | 2.20e-28 | 161 |
hematopoietic stem cell | 6.22e-27 | 168 |
hematopoietic cell | 3.11e-25 | 177 |
mast cell | 9.73e-10 | 5 |
basophil mast progenitor cell | 9.73e-10 | 5 |
mesenchymal cell | 2.74e-09 | 354 |
connective tissue cell | 5.61e-09 | 361 |
motile cell | 1.18e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.01e-63 | 76 |
bone element | 8.10e-58 | 82 |
immune system | 1.09e-53 | 93 |
skeletal element | 3.60e-52 | 90 |
hematopoietic system | 1.19e-50 | 98 |
blood island | 1.19e-50 | 98 |
skeletal system | 2.29e-46 | 100 |
hemolymphoid system | 2.11e-45 | 108 |
musculoskeletal system | 2.83e-25 | 167 |
lateral plate mesoderm | 3.60e-21 | 203 |
mesoderm | 2.57e-12 | 315 |
mesoderm-derived structure | 2.57e-12 | 315 |
presumptive mesoderm | 2.57e-12 | 315 |
connective tissue | 1.49e-08 | 371 |
vagina | 9.67e-07 | 1 |