FFCP PHASE1:Hg19::chr3:162256416..162256425,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:162256416..162256425,- | |||
|coexpression_cluster_id=C477 | |||
|description=CAGE_peak_at_chr3:162256416..162256425,- | |description=CAGE_peak_at_chr3:162256416..162256425,- | ||
|id=chr3:162256416..162256425,- | |id=chr3:162256416..162256425,- | ||
|ontology_enrichment_celltype=CL:0002569!2.45e-41!6;CL:0002588!1.00e-31!2;CL:0000342!1.65e-16!1;CL:0002565!1.65e-16!1;CL:0002568!2.25e-16!1;CL:0002551!5.36e-11!6 | |ontology_enrichment_celltype=CL:0002569!2.45e-41!6;CL:0002588!1.00e-31!2;CL:0000342!1.65e-16!1;CL:0002565!1.65e-16!1;CL:0002568!2.25e-16!1;CL:0002551!5.36e-11!6 | ||
|ontology_enrichment_celltype_v019=CL:0002569;9.01e-60;6!CL:0002588;5.15e-21;2!CL:0000349;1.35e-19;19!CL:0002615;2.09e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,9.96e-60,6;CL:0002588,4.66e-21,2;CL:0000349,1.39e-19,19;CL:0002615,2.09e-14,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003422!2.45e-41!6;UBERON:0002331!5.32e-25!10;UBERON:0000358!5.32e-25!10;UBERON:0000307!5.32e-25!10;UBERON:0000091!5.32e-25!10;UBERON:0000087!5.32e-25!10;UBERON:0007806!5.32e-25!10;UBERON:0008780!5.32e-25!10;UBERON:0005728!5.32e-25!10;UBERON:0002506!1.65e-16!1;UBERON:0001769!1.65e-16!1;UBERON:0000478!5.15e-16!24;UBERON:0002066!2.52e-13!5;UBERON:0001638!8.31e-08!9;UBERON:0003920!8.31e-08!9;UBERON:0004582!8.31e-08!9;UBERON:0002067!1.25e-07!9;UBERON:0004016!1.25e-07!9;UBERON:0010083!1.25e-07!9 | |ontology_enrichment_uberon=UBERON:0003422!2.45e-41!6;UBERON:0002331!5.32e-25!10;UBERON:0000358!5.32e-25!10;UBERON:0000307!5.32e-25!10;UBERON:0000091!5.32e-25!10;UBERON:0000087!5.32e-25!10;UBERON:0007806!5.32e-25!10;UBERON:0008780!5.32e-25!10;UBERON:0005728!5.32e-25!10;UBERON:0002506!1.65e-16!1;UBERON:0001769!1.65e-16!1;UBERON:0000478!5.15e-16!24;UBERON:0002066!2.52e-13!5;UBERON:0001638!8.31e-08!9;UBERON:0003920!8.31e-08!9;UBERON:0004582!8.31e-08!9;UBERON:0002067!1.25e-07!9;UBERON:0004016!1.25e-07!9;UBERON:0010083!1.25e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0003422;9.01e-60;6!UBERON:0003104;2.11e-51;7!UBERON:0009142;2.11e-51;7!UBERON:0002331;2.54e-36;10!UBERON:0000478;1.05e-15;24!UBERON:0002066;3.10e-09;5!UBERON:0003688;7.25e-08;6!UBERON:0002358;7.25e-08;6!UBERON:0003684;7.25e-08;6!UBERON:0001178;7.25e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003422,9.96e-60,6;UBERON:0002331,2.70e-36,10;UBERON:0000358,2.70e-36,10;UBERON:0000307,2.70e-36,10;UBERON:0000091,2.70e-36,10;UBERON:0000087,2.70e-36,10;UBERON:0007010,2.70e-36,10;UBERON:0007806,2.70e-36,10;UBERON:0008780,2.70e-36,10;UBERON:0005728,2.70e-36,10;UBERON:0000478,1.07e-15,24;UBERON:0002066,2.97e-09,5;UBERON:0003688,7.25e-08,6;UBERON:0002358,7.25e-08,6;UBERON:0003684,7.25e-08,6;UBERON:0001178,7.25e-08,6 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,14.650783345569,9.05564370458846,0,0,2.37585561880029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537101224341368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,2.84922218938051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,14.650783345569,9.05564370458846,0,0,2.37585561880029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537101224341368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430234056612155,2.84922218938051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:162256416..162256425,- | |short_description=p@chr3:162256416..162256425,- | ||
}} | }} |
Latest revision as of 17:51, 29 July 2015
Short description: | p@chr3:162256416..162256425, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:162256416..162256425, - |
Coexpression cluster: | C477_Mesenchymal_Amniotic_Placental_chorionic_umbilical_Cardiac_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 9.96e-60 | 6 |
smooth muscle cell of the umbilical vein | 4.66e-21 | 2 |
extraembryonic cell | 1.39e-19 | 19 |
adipocyte of omentum tissue | 2.09e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
mesenchyme of umbilical cord | 9.96e-60 | 6 |
umbilical cord | 2.70e-36 | 10 |
blastocyst | 2.70e-36 | 10 |
blastula | 2.70e-36 | 10 |
bilaminar disc | 2.70e-36 | 10 |
inner cell mass | 2.70e-36 | 10 |
cleaving embryo | 2.70e-36 | 10 |
connecting stalk | 2.70e-36 | 10 |
inner cell mass derived epiblast | 2.70e-36 | 10 |
extraembryonic mesoderm | 2.70e-36 | 10 |
extraembryonic structure | 1.07e-15 | 24 |
umbilical vein | 2.97e-09 | 5 |
omentum | 7.25e-08 | 6 |
peritoneum | 7.25e-08 | 6 |
abdominal cavity | 7.25e-08 | 6 |
visceral peritoneum | 7.25e-08 | 6 |