FFCP PHASE1:Hg19::chr3:181429641..181429650,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6657 | |EntrezGene=entrezgene:6657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=11195 | |HGNC=HGNC:11195 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=P48431 | |UniProt=uniprot:P48431 | ||
|association_with_transcript=-61bp_to_NM_003106_5end | |association_with_transcript=-61bp_to_NM_003106_5end | ||
|cluster_id=chr3:181429641..181429650,+ | |||
|coexpression_cluster_id=C1056 | |coexpression_cluster_id=C1056 | ||
|description=CAGE_peak_3_at_SOX2_5end | |description=CAGE_peak_3_at_SOX2_5end | ||
Revision as of 18:35, 29 July 2015
| Short description: | p3@SOX2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SOX2_5end |
| Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
| Association with transcript: | -61bp_to_NM_003106_5end |
| EntrezGene: | 6657 |
| HGNC: | 11195 |
| UniProt: | P48431 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SOX2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural cell | 3.67e-17 | 25 |
| neuronal stem cell | 9.15e-17 | 8 |
| neuron | 1.57e-11 | 6 |
| neuroblast | 1.57e-11 | 6 |
| electrically signaling cell | 1.57e-11 | 6 |
| oligodendrocyte | 2.99e-10 | 7 |
| macroglial cell | 2.99e-10 | 7 |
| astrocyte | 2.99e-10 | 7 |
| oligodendrocyte precursor cell | 2.99e-10 | 7 |
| neurectodermal cell | 6.43e-10 | 59 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.11e-88 | 81 |
| neural tube | 1.11e-83 | 56 |
| neural rod | 1.11e-83 | 56 |
| future spinal cord | 1.11e-83 | 56 |
| neural keel | 1.11e-83 | 56 |
| nervous system | 7.63e-82 | 89 |
| regional part of nervous system | 4.54e-80 | 53 |
| regional part of brain | 4.54e-80 | 53 |
| brain | 1.15e-68 | 68 |
| future brain | 1.15e-68 | 68 |
Showing 1 to 10 of 78 entries
