FFCP PHASE1:Hg19::chr4:56815338..56815351,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:56815338..56815351,- | |||
|coexpression_cluster_id=C6 | |coexpression_cluster_id=C6 | ||
|description=CAGE_peak_at_chr4:56815338..56815351,- | |description=CAGE_peak_at_chr4:56815338..56815351,- | ||
|id=chr4:56815338..56815351,- | |id=chr4:56815338..56815351,- | ||
|ontology_enrichment_celltype=CL:0000860;1.94e-63;33!CL:0002057;1.94e-63;33!CL:0000473;8.31e-45;39!CL:0000234;8.31e-45;39!CL:0000576;7.51e-44;48!CL:0000766;2.54e-22;69!CL:0002393;3.59e-17;6!CL:0002397;3.59e-17;6!CL:0002087;9.13e-14;104!CL:0000763;1.36e-13;100!CL:0000738;4.50e-09;136!CL:0000767;5.95e-09;3!CL:0000094;1.80e-07;8!CL:0000511;2.49e-07;1!CL:0002625;2.49e-07;1!CL:0000216;2.49e-07;1 | |ontology_enrichment_celltype=CL:0002057!3.64e-38!42;CL:0000860!2.81e-36!45;CL:0002087!2.53e-32!119;CL:0000738!8.24e-32!140;CL:0000766!5.64e-31!76;CL:0002031!1.30e-30!124;CL:0000037!2.19e-30!172;CL:0000566!2.19e-30!172;CL:0002032!6.23e-29!165;CL:0000837!6.23e-29!165;CL:0000839!9.84e-29!70;CL:0000988!1.83e-28!182;CL:0002194!2.28e-28!63;CL:0000576!2.28e-28!63;CL:0000040!2.28e-28!63;CL:0000559!2.28e-28!63;CL:0000557!4.78e-28!71;CL:0002009!6.38e-27!65;CL:0000763!8.61e-24!112;CL:0000049!8.61e-24!112;CL:0000219!2.20e-13!390;CL:0000134!2.55e-13!358;CL:0000723!5.35e-13!436;CL:0000048!5.84e-13!430;CL:0000034!8.58e-13!444;CL:0002320!9.08e-13!365;CL:0002393!2.10e-10!9;CL:0002397!2.10e-10!9;CL:0000548!3.58e-08!679;CL:0000004!3.58e-08!679;CL:0000255!3.58e-08!679;CL:0000012!6.68e-08!682;CL:0000144!8.39e-08!625;CL:0000003!2.49e-07!722;CL:0002371!3.89e-07!591 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;1.94e-63;33!CL:0002057;1.94e-63;33!CL:0000473;8.31e-45;39!CL:0000234;8.31e-45;39!CL:0000576;7.51e-44;48!CL:0000766;2.54e-22;69!CL:0002393;3.59e-17;6!CL:0002397;3.59e-17;6!CL:0002087;9.13e-14;104!CL:0000763;1.36e-13;100!CL:0000738;4.50e-09;136!CL:0000767;5.95e-09;3!CL:0000094;1.80e-07;8!CL:0000511;2.49e-07;1!CL:0002625;2.49e-07;1!CL:0000216;2.49e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.03e-79,42;CL:0002057,2.03e-79,42;CL:0000473,6.60e-69,48;CL:0000234,6.60e-69,48;CL:0000766,3.17e-56,72;CL:0002194,3.50e-54,59;CL:0000576,3.50e-54,59;CL:0000040,3.50e-54,59;CL:0000559,3.50e-54,59;CL:0002009,2.78e-52,61;CL:0000839,5.02e-48,66;CL:0000557,3.00e-47,67;CL:0000763,5.76e-36,108;CL:0000049,5.76e-36,108;CL:0000738,2.71e-32,136;CL:0002087,1.26e-30,115;CL:0002031,3.75e-29,120;CL:0002032,1.76e-26,161;CL:0000837,1.76e-26,161;CL:0000037,3.68e-25,168;CL:0000988,1.29e-23,177;CL:0002393,1.44e-11,9;CL:0002397,1.44e-11,9;CL:0000134,4.47e-09,354;CL:0000767,5.97e-09,3;CL:0002320,8.61e-09,361;CL:0000219,8.69e-08,386;CL:0000511,1.72e-07,1;CL:0002625,1.72e-07,1;CL:0000216,1.72e-07,1;CL:0000094,1.76e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.88e-56;42!CL:0000049;1.82e-11;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001136;2.49e-07;1!UBERON:0001343;2.49e-07;1!UBERON:0004910;2.49e-07;1!UBERON:0004813;2.49e-07;1 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.49e-26!102;UBERON:0003061!1.49e-26!102;UBERON:0002371!3.87e-26!80;UBERON:0001474!9.21e-25!86;UBERON:0002193!6.25e-23!112;UBERON:0004765!9.86e-21!101;UBERON:0001434!9.86e-21!101;UBERON:0002405!7.88e-17!115;UBERON:0002204!2.25e-13!167;UBERON:0002384!1.78e-11!375;UBERON:0003081!1.31e-09!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;2.49e-07;1!UBERON:0001343;2.49e-07;1!UBERON:0004910;2.49e-07;1!UBERON:0004813;2.49e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.61e-41,76;UBERON:0001474,7.57e-38,82;UBERON:0004765,4.25e-34,90;UBERON:0002390,9.42e-34,98;UBERON:0003061,9.42e-34,98;UBERON:0002405,7.42e-33,93;UBERON:0001434,3.03e-30,100;UBERON:0002193,3.34e-30,108;UBERON:0003081,3.18e-18,203;UBERON:0002204,3.02e-16,167;UBERON:0000926,7.79e-10,315;UBERON:0004120,7.79e-10,315;UBERON:0006603,7.79e-10,315;UBERON:0002384,2.11e-08,371;UBERON:0001136,1.72e-07,1;UBERON:0001343,1.72e-07,1;UBERON:0004910,1.72e-07,1;UBERON:0005154,1.72e-07,1;UBERON:0005295,1.72e-07,1;UBERON:0004813,1.72e-07,1;UBERON:0005297,1.72e-07,1;UBERON:0005294,1.72e-07,1;UBERON:0010141,1.72e-07,1;UBERON:0005891,1.72e-07,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0.872338524100369,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0,0.305653622991805,0.0821005894499457,0.314843125254717,0.393364276848904,1.15148819429164,1.54816123316076,0,0,0,0.232401601740905,0.142169232487422,0.293600439334847,2.21598163412751,3.20871115952227,4.99125002646459,0.223915474239924,0,0,0.872389432677388,0.377875943688809,0.242584061187816,0.697287110717054,0.822335776043652,0,2.58923153089935,2.0492856522328,1.41889337933151,3.10271112662957,1.29096936716765,0,0.752969358170419,1.09162460023138,0.224723484445085,1.53041946185451,0.962787081228281,2.55734850319616,1.31940520074686,1.39624560335142,1.27867425159808,2.03146467040009,1.70215567407342,1.86846674698672,2.26123798731069,1.5644487552606,1.95469960234605,1.81619850790011,1.10483290796269,0.632924774881769,0.845021145247767,0.850417199860174,1.67726916406701,1.12328631146495,0.901061357049038,0.32145117339416,0.570025487482497,0.59675003159727,0.730656615058536,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0,0.661044872784862,0.954053754535364,1.1384259382189,0,1.14681968437569,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,1.53316637465883,0,0.183201743930407,0,3.87780264148325,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0.358779271377724,0,0,0,0,0.257640540045629,0,0,0,0,0.184099797284599,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.330881918197182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0.985326475791887,0.088048434013226,0.621984346622316,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0.591092280605782,0.431255149719035,0.513372145118994,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0.215714200818617,0.960548020230999,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.120859449591622,0,0,0,0.182091168006717,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0.580066775656914,0,0.0890320356467374,0.165284915360978,0.192190067365106,0,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0.245040215981032,0,0,0.0711418433484141,0.159426272728822,0.199579371432817,0,0,0.324621940274555,0.280797178113459,0.228234679033192,0,0,0.169291777801603,0.1605880751037,0,0.425846237690326,0,0,0.447352215784832,0.500547425135725,0,0,0,0,0,0,0,0,0.121360521749513,0.111443384277478,0,0,0,0,0,0,0.111308705022906,0.659215496907038,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0.158936578980379,0,0,0,0,0,0,0,0,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0,0.246346371159628,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.26961417541674,0,0.169346664131569,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0.251567901752575,0,0,0.302461847526478,0.15543720058278,0.295710299979268,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0.38582807654183,0,0,0,0.303859956177382,0,0,0,0,0.327609848846413,0,0,0,0.106691729694141,0.172214979660816,0,0,0.139879507719444,0,0,0,0,0.109209638192014,0,0,0,0,0,0.157723490002507,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,0.236387681767936,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|phase1_expression=0.181678379270557,0,0,0,0,0.872338524100369,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0,0.305653622991805,0.0821005894499457,0.314843125254717,0.393364276848904,1.15148819429164,1.54816123316076,0,0,0,0.232401601740905,0.142169232487422,0.293600439334847,2.21598163412751,3.20871115952227,4.99125002646459,0.223915474239924,0,0,0.872389432677388,0.377875943688809,0.242584061187816,0.697287110717054,0.822335776043652,0,2.58923153089935,2.0492856522328,1.41889337933151,3.10271112662957,1.29096936716765,0,0.752969358170419,1.09162460023138,0.224723484445085,1.53041946185451,0.962787081228281,2.55734850319616,1.31940520074686,1.39624560335142,1.27867425159808,2.03146467040009,1.70215567407342,1.86846674698672,2.26123798731069,1.5644487552606,1.95469960234605,1.81619850790011,1.10483290796269,0.632924774881769,0.845021145247767,0.850417199860174,1.67726916406701,1.12328631146495,0.901061357049038,0.32145117339416,0.570025487482497,0.59675003159727,0.730656615058536,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0,0.661044872784862,0.954053754535364,1.1384259382189,0,1.14681968437569,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0.953962497221368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,1.53316637465883,0,0.183201743930407,0,3.87780264148325,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0.358779271377724,0,0,0,0,0.257640540045629,0,0,0,0,0.184099797284599,0,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.330881918197182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0.985326475791887,0.088048434013226,0.621984346622316,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0.591092280605782,0.431255149719035,0.513372145118994,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0.215714200818617,0.960548020230999,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.120859449591622,0,0,0,0.182091168006717,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0.580066775656914,0,0.0890320356467374,0.165284915360978,0.192190067365106,0,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0.245040215981032,0,0,0.0711418433484141,0.159426272728822,0.199579371432817,0,0,0.324621940274555,0.280797178113459,0.228234679033192,0,0,0.169291777801603,0.1605880751037,0,0.425846237690326,0,0,0.447352215784832,0.500547425135725,0,0,0,0,0,0,0,0,0.121360521749513,0.111443384277478,0,0,0,0,0,0,0.111308705022906,0.659215496907038,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.183195186803725,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0.158936578980379,0,0,0,0,0,0,0,0,0.247127877893006,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0,0.246346371159628,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.26961417541674,0,0.169346664131569,0,0,0.321506296930038,0.275078873194468,0.415440338029185,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0.251567901752575,0,0,0.302461847526478,0.15543720058278,0.295710299979268,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0.38582807654183,0,0,0,0.303859956177382,0,0,0,0,0.327609848846413,0,0,0,0.106691729694141,0.172214979660816,0,0,0.139879507719444,0,0,0,0,0.109209638192014,0,0,0,0,0,0.157723490002507,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,0.236387681767936,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| ||
|short_description=p@chr4:56815338..56815351,- | |short_description=p@chr4:56815338..56815351,- | ||
}} | }} |
Latest revision as of 05:46, 30 July 2015
Short description: | p@chr4:56815338..56815351, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:56815338..56815351, - |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.61e-41 | 76 |
bone element | 7.57e-38 | 82 |
skeletal element | 4.25e-34 | 90 |
hematopoietic system | 9.42e-34 | 98 |
blood island | 9.42e-34 | 98 |
immune system | 7.42e-33 | 93 |
skeletal system | 3.03e-30 | 100 |
hemolymphoid system | 3.34e-30 | 108 |
lateral plate mesoderm | 3.18e-18 | 203 |
musculoskeletal system | 3.02e-16 | 167 |
mesoderm | 7.79e-10 | 315 |
mesoderm-derived structure | 7.79e-10 | 315 |
presumptive mesoderm | 7.79e-10 | 315 |
connective tissue | 2.11e-08 | 371 |
mesothelium | 1.72e-07 | 1 |
seminiferous tubule of testis | 1.72e-07 | 1 |
epithelium of male gonad | 1.72e-07 | 1 |
epithelial cord | 1.72e-07 | 1 |
sex cord | 1.72e-07 | 1 |
seminiferous tubule epithelium | 1.72e-07 | 1 |
testis sex cord | 1.72e-07 | 1 |
genital ridge | 1.72e-07 | 1 |
primitive sex cord of indifferent gonad | 1.72e-07 | 1 |
coelomic epithelium | 1.72e-07 | 1 |