FFCP PHASE1:Hg19::chr6:36652080..36652094,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-34bp_to_BC037414_5end | |association_with_transcript=-34bp_to_BC037414_5end | ||
|cluster_id=chr6:36652080..36652094,+ | |||
|coexpression_cluster_id=C672 | |coexpression_cluster_id=C672 | ||
|description=CAGE_peak_1_at_BC037414_5end | |description=CAGE_peak_1_at_BC037414_5end | ||
|id=chr6:36652080..36652094,+ | |id=chr6:36652080..36652094,+ | ||
|ontology_enrichment_celltype=CL:0002371!8.86e-23!591;CL:0000144!1.47e-21!625;CL:0000548!1.30e-19!679;CL:0000004!1.30e-19!679;CL:0000255!1.30e-19!679;CL:0000012!3.12e-19!682;CL:0000003!3.17e-14!722;CL:0002057!1.45e-13!42;CL:0000860!2.36e-12!45;CL:0000723!4.26e-11!436;CL:0000048!5.87e-11!430;CL:0000063!1.26e-10!578;CL:0000034!2.51e-10!444;CL:0000192!1.62e-09!42;CL:0000514!1.62e-09!42;CL:0002009!4.02e-09!65;CL:0002194!1.15e-08!63;CL:0000576!1.15e-08!63;CL:0000040!1.15e-08!63;CL:0000559!1.15e-08!63;CL:0000557!1.34e-08!71;CL:0000055!1.55e-08!180;CL:0000359!1.77e-08!32;CL:0000839!4.49e-08!70;CL:0000183!1.08e-07!59;CL:0000680!1.32e-07!57;CL:0000056!1.32e-07!57;CL:0000355!1.32e-07!57;CL:0000187!1.54e-07!54;CL:0000220!2.90e-07!246;CL:0002321!4.90e-07!248;CL:0000393!9.59e-07!60;CL:0000211!9.59e-07!60 | |ontology_enrichment_celltype=CL:0002371!8.86e-23!591;CL:0000144!1.47e-21!625;CL:0000548!1.30e-19!679;CL:0000004!1.30e-19!679;CL:0000255!1.30e-19!679;CL:0000012!3.12e-19!682;CL:0000003!3.17e-14!722;CL:0002057!1.45e-13!42;CL:0000860!2.36e-12!45;CL:0000723!4.26e-11!436;CL:0000048!5.87e-11!430;CL:0000063!1.26e-10!578;CL:0000034!2.51e-10!444;CL:0000192!1.62e-09!42;CL:0000514!1.62e-09!42;CL:0002009!4.02e-09!65;CL:0002194!1.15e-08!63;CL:0000576!1.15e-08!63;CL:0000040!1.15e-08!63;CL:0000559!1.15e-08!63;CL:0000557!1.34e-08!71;CL:0000055!1.55e-08!180;CL:0000359!1.77e-08!32;CL:0000839!4.49e-08!70;CL:0000183!1.08e-07!59;CL:0000680!1.32e-07!57;CL:0000056!1.32e-07!57;CL:0000355!1.32e-07!57;CL:0000187!1.54e-07!54;CL:0000220!2.90e-07!246;CL:0002321!4.90e-07!248;CL:0000393!9.59e-07!60;CL:0000211!9.59e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.40e-24;33!CL:0002057;3.40e-24;33!CL:0000473;9.48e-18;39!CL:0000234;9.48e-18;39!CL:0000576;1.15e-10;48!CL:0000359;5.58e-08;32!CL:0002539;3.22e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.28e-20,42;CL:0002057,1.28e-20,42;CL:0000473,9.05e-19,48;CL:0000234,9.05e-19,48;CL:0000048,5.71e-16,427;CL:0000723,1.48e-15,433;CL:0002009,1.49e-15,61;CL:0002194,1.86e-15,59;CL:0000576,1.86e-15,59;CL:0000040,1.86e-15,59;CL:0000559,1.86e-15,59;CL:0000034,1.76e-14,441;CL:0000557,1.11e-13,67;CL:0000839,3.75e-13,66;CL:0000766,9.10e-12,72;CL:0002320,2.22e-11,361;CL:0000134,1.23e-10,354;CL:0000219,3.49e-08,386;CL:0000359,3.54e-08,32;CL:0000192,4.15e-08,43;CL:0000514,4.15e-08,43;CL:0002539,1.77e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.72e-15;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.78e-15!167;UBERON:0003081!1.59e-12!216;UBERON:0000926!4.42e-11!448;UBERON:0004120!4.42e-11!448;UBERON:0006603!4.42e-11!448;UBERON:0001637!7.12e-09!42;UBERON:0003509!7.12e-09!42;UBERON:0004572!7.12e-09!42;UBERON:0004872!1.25e-08!84;UBERON:0001981!1.41e-08!60;UBERON:0007500!1.41e-08!60;UBERON:0004537!1.41e-08!60;UBERON:0006965!1.41e-08!60;UBERON:0004765!3.24e-08!101;UBERON:0001434!3.24e-08!101;UBERON:0002371!3.83e-08!80;UBERON:0000055!5.30e-08!69;UBERON:0004573!2.46e-07!33;UBERON:0004571!2.46e-07!33;UBERON:0001474!2.50e-07!86;UBERON:0000486!3.05e-07!82;UBERON:0000914!3.60e-07!83;UBERON:0002329!3.60e-07!83;UBERON:0003077!3.60e-07!83;UBERON:0003059!3.60e-07!83;UBERON:0007282!3.60e-07!83;UBERON:0009618!3.60e-07!83;UBERON:0007285!3.60e-07!83;UBERON:0002049!3.87e-07!79;UBERON:0007798!3.87e-07!79 | |ontology_enrichment_uberon=UBERON:0002204!1.78e-15!167;UBERON:0003081!1.59e-12!216;UBERON:0000926!4.42e-11!448;UBERON:0004120!4.42e-11!448;UBERON:0006603!4.42e-11!448;UBERON:0001637!7.12e-09!42;UBERON:0003509!7.12e-09!42;UBERON:0004572!7.12e-09!42;UBERON:0004872!1.25e-08!84;UBERON:0001981!1.41e-08!60;UBERON:0007500!1.41e-08!60;UBERON:0004537!1.41e-08!60;UBERON:0006965!1.41e-08!60;UBERON:0004765!3.24e-08!101;UBERON:0001434!3.24e-08!101;UBERON:0002371!3.83e-08!80;UBERON:0000055!5.30e-08!69;UBERON:0004573!2.46e-07!33;UBERON:0004571!2.46e-07!33;UBERON:0001474!2.50e-07!86;UBERON:0000486!3.05e-07!82;UBERON:0000914!3.60e-07!83;UBERON:0002329!3.60e-07!83;UBERON:0003077!3.60e-07!83;UBERON:0003059!3.60e-07!83;UBERON:0007282!3.60e-07!83;UBERON:0009618!3.60e-07!83;UBERON:0007285!3.60e-07!83;UBERON:0002049!3.87e-07!79;UBERON:0007798!3.87e-07!79 | ||
|ontology_enrichment_uberon_v019=UBERON:0004237;3.22e-07;10!UBERON:0004695;3.22e-07;10!UBERON:0002111;3.22e-07;10!UBERON:0004178;3.22e-07;10 | |||
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|phase1_expression=1.2717486548939,2.99740733447376,1.83240725324762,1.0007329835313,3.12872766099101,4.36169262050184,0,0,1.04474251279935,0.245733936501509,2.79120467188971,0.436882744260345,0.791300934685361,0.37129905888014,2.31978163009541,2.6893005858071,6.02694528023977,7.30310090387373,4.87932798790507,0.123121058076788,0.408001382488506,0,0,0,0.125542639594803,1.22261449196722,0.738905305049512,0.393553906568396,1.57345710739562,0,0.77408061658038,1.83884244895785,2.409647350226,9.24385025416969,0.0774672005803016,0,0,0,1.80490002723128,0.217010870715852,0,0.32389366601898,0,1.74477886535478,1.51150377475524,1.21292030593908,3.71886459049095,6.16751832032739,4.95530193432166,9.49384894663097,9.73410684810582,8.98632473576624,2.41321976515633,5.16387746867061,4.06279459783025,4.89430082810772,4.09359225086769,3.82029923556644,10.4068523406107,4.49300637906531,10.2293940127847,5.27762080298746,7.18069167437875,10.6556187633174,6.67481248845743,6.24123747160254,5.60540024096017,10.80369260604,10.9511412868242,7.16723187526885,4.23779651843358,4.05105399586321,3.16462387440884,1.05627643155971,0.425208599930087,0.209658645508376,0.112328631146495,0.600707571366025,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,1.14681968437569,0,0.560508562981536,0,0,0.786021525498329,0.205601498999509,0.668745981562712,0,0,0,0.222820913770347,0,0,0,0.384273959177026,0.260118695119756,0.328875809207352,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802320587350522,0.579297615531196,0,0,0,0.361439152384566,1.00267582127178,0.579386075843295,0,0.486634870302636,0.189069634328136,2.88248216701333,0.614843499851882,0.0654895377488563,0.728590576585084,1.11235332835329,1.62273696827342,1.56716763569341,3.72282289452822,0.238490624305342,0.571994910780128,0.74291500265913,0.39752481473341,1.72046919021225,0,0,0.838998872419812,1.6507082516404,2.08994966536811,0,0,0,0.805658634218294,0,0.976248230192678,0,3.24056779152704,0.267899184852239,0,0.225222960966644,0,1.89853131913626,1.09921046358244,0,0,0,1.98788780678127,1.13967460498122,0.264818361626438,1.43418310374407,0.354668382198357,1.12135520028461,2.1349799145941,1.97334038733728,0,0.942974704487816,0.653847612453835,0,0.576175924479999,0.234321431833797,0,0,0.597794722207204,1.76151747965647,0.809364721840658,0.280901613404497,0.408308342509787,0.491337269247072,1.13658359293342,0,1.7308685049499,0.910161361938026,2.15585442544872,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,1.5324389789951,0.901428353439581,0.340296549480063,0.358779271377724,1.49490172172997,0.635795703478686,0,1.75189299705346,0.515281080091258,1.11670113798954,0.168776332241266,1.36411807225678,0.252433774244115,0.736399189138395,1.93975268182574,0.355009592516614,1.0075209822764,0.339121184620975,2.12586938479627,0.272746120590835,1.43402297694502,0.243947412259191,0,0,0.310983165046111,0.252320850875628,0,1.56449532329816,0,1.38134921352481,1.39310378409594,3.60939740834793,0.118306800039844,0.674338760312407,0,0.441175890929576,0.435758888184812,0.237270619111097,0.539325232640658,0.392442930250692,0.38474715694639,2.95262181849859,4.20725321410337,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,0.804231779293047,0.462942225792648,1.3032332212413,1.03993478527958,0,0.231860809950154,0.352226082707465,1.15493158208859,0.462985512576611,0.570762456703795,0.790204397959275,0,0,0.234004265139238,1.18904929830983,0.93733833986777,1.51183915378974,0.992425680696705,0.806026704325635,0.290633938513962,1.53353071666084,0.492663237895943,0.176096868026452,0.207328115540772,1.00883967391873,0.50496973370552,0.063497894292169,1.90994212779139,2.34434894420094,3.4214489204541,0.411309970813294,0.300343057843917,0.857479297891735,0,0.87192013766656,0.07333828582095,0.904902010304444,3.57656445851882,0,2.12750493267896,1.04007436911366,0.257207374262142,0,1.0656887160644,0.428933980974443,1.08524321078289,2.46972101034231,0.325736184293735,0.355391948742546,0.791951872933429,0.602878754119172,1.74306691720059,0.99972991182057,0,0.502257091432126,2.10833939483032,0.239624855491583,1.14861935834114,0,1.44781306667579,0.205476322550383,0.358121926479791,0.112085143993527,0.197030760201927,0.215627574859517,0.256686072559497,0.508189248444927,0,0,0,3.18969375826582,0,0,0,0,1.00034104211935,0.813795071099207,0.623912584592421,7.85087550707512,3.78485796081443,0.819989904948992,2.10662269809403,4.5481500811197,1.03473071292505,0,1.65932251687533,1.12948698808508,1.17480694477644,2.05886054286514,0.206768026122887,1.72571360654893,1.06727557803444,0.606255142892519,1.66435439510497,0.907170879989041,3.2254015016441,0,4.49056151092918,3.97231362692673,0.511707249066704,3.53878626515936,8.90508398669946,0.925258162815933,1.24293207719189,0.246381468041427,4.15403543346897,1.51073491997947,0,2.40607764363942,5.34069735828199,2.29628896329214,2.00300284807389,2.09799063935079,0,1.5403067420883,0.784349769176855,1.46139224653261,0.316654886678627,0,0.510281115829547,0.647747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| ||
|short_description=p1@BC037414 | |short_description=p1@BC037414 | ||
}} | }} |
Latest revision as of 01:10, 31 July 2015
Short description: | p1@BC037414 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC037414_5end |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | -34bp_to_BC037414_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.28e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-20 | 42 |
defensive cell | 9.05e-19 | 48 |
phagocyte | 9.05e-19 | 48 |
multi fate stem cell | 5.71e-16 | 427 |
somatic stem cell | 1.48e-15 | 433 |
macrophage dendritic cell progenitor | 1.49e-15 | 61 |
monopoietic cell | 1.86e-15 | 59 |
monocyte | 1.86e-15 | 59 |
monoblast | 1.86e-15 | 59 |
promonocyte | 1.86e-15 | 59 |
stem cell | 1.76e-14 | 441 |
granulocyte monocyte progenitor cell | 1.11e-13 | 67 |
myeloid lineage restricted progenitor cell | 3.75e-13 | 66 |
myeloid leukocyte | 9.10e-12 | 72 |
connective tissue cell | 2.22e-11 | 361 |
mesenchymal cell | 1.23e-10 | 354 |
motile cell | 3.49e-08 | 386 |
vascular associated smooth muscle cell | 3.54e-08 | 32 |
smooth muscle cell | 4.15e-08 | 43 |
smooth muscle myoblast | 4.15e-08 | 43 |
aortic smooth muscle cell | 1.77e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.58e-17 | 315 |
mesoderm-derived structure | 3.58e-17 | 315 |
presumptive mesoderm | 3.58e-17 | 315 |
musculoskeletal system | 3.63e-16 | 167 |
lateral plate mesoderm | 2.34e-15 | 203 |
bone marrow | 1.77e-13 | 76 |
bone element | 2.32e-12 | 82 |
skeletal element | 5.53e-12 | 90 |
skeletal system | 2.04e-11 | 100 |
connective tissue | 1.32e-10 | 371 |
immune system | 8.42e-10 | 93 |
artery | 2.44e-09 | 42 |
arterial blood vessel | 2.44e-09 | 42 |
arterial system | 2.44e-09 | 42 |
hematopoietic system | 1.43e-08 | 98 |
blood island | 1.43e-08 | 98 |
epithelial tube open at both ends | 8.80e-08 | 59 |
blood vessel | 8.80e-08 | 59 |
blood vasculature | 8.80e-08 | 59 |
vascular cord | 8.80e-08 | 59 |
hemolymphoid system | 1.28e-07 | 108 |
systemic artery | 1.40e-07 | 33 |
systemic arterial system | 1.40e-07 | 33 |
splanchnic layer of lateral plate mesoderm | 1.48e-07 | 83 |
blood vessel smooth muscle | 1.77e-07 | 10 |
arterial system smooth muscle | 1.77e-07 | 10 |
artery smooth muscle tissue | 1.77e-07 | 10 |
aorta smooth muscle tissue | 1.77e-07 | 10 |
vessel | 9.86e-07 | 68 |