FFCP PHASE1:Mm9::chr19:55985121..55985142,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=141|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55985121..55985142,+|id=chr19:55985121..55985142,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-20,23;CL:0000337,2.70e-20,23;CL:0002613,1.96e-19,3;CL:0000120,1.36e-18,3;CL:0002610,3.06e-18,3;CL:0000540,7.55e-14,33;CL:0000047,7.55e-14,33;CL:0000031,7.55e-14,33;CL:0000404,7.55e-14,33;CL:0002319,8.24e-13,43;CL:0000221,1.72e-12,44;CL:0000133,1.72e-12,44;CL:0000393,1.47e-11,39;CL:0000211,1.47e-11,39;CL:0002321,2.19e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.06e-18,3;UBERON:0002275,3.06e-18,3;UBERON:0000369,6.79e-12,5;UBERON:0002435,6.79e-12,5;UBERON:0000204,6.79e-12,5;UBERON:0010082,6.79e-12,5;UBERON:0001017,2.25e-10,73;UBERON:0001016,4.68e-10,75;UBERON:0000073,5.74e-08,54;UBERON:0002420,1.28e-07,8;UBERON:0007245,1.28e-07,8;UBERON:0010009,1.28e-07,8;UBERON:0010011,1.28e-07,8;UBERON:0000454,1.28e-07,8;UBERON:0004121,1.32e-07,95;UBERON:0000924,1.32e-07,95;UBERON:0006601,1.32e-07,95;UBERON:0002259,3.67e-07,1;UBERON:0002314,3.67e-07,1;UBERON:0004061,3.67e-07,1;UBERON:0006777,3.67e-07,1;UBERON:0005882,3.67e-07,1|phase1_expression=0.160148847104794,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0.218025156380447,1.31811709640683,0.58328969722285,0.139986421625363,0,0,0,0,0.771778308107841,0,0,1.61853168687678,2.64495489636016,3.80298842103708,0,0,0,0,0.7104801149461,0.898800331555214,0.768436610643109,0.103689612308478,0,0,0.285650984403804,0,0,0.191690942036473,0,1.10115880999389,3.31987079021488,2.30409799884365,9.10015385338338,17.3826522844578,8.85552729946492,0.279182999001381,0,0.15279824777681,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0.259786004602869,1.06001872353102,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0.125666591329675,0.247194967734374,0,0,0.323533699894818,0,0,0,0,0.209446706813455,0,0,0,0,1.64769703345305,0,0.251308704225729,0,0,1.87009240103604,0.162241263067758,0.305518091550949,0.124406970610093,0,0.210441855886474,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0,0,0.258703370739016,0.646703978798527,0.378212160335639,0.175951124163949,0,0.556094498451196,0,0,0.199034266818493,0,0,0,0.414251545071004,0.469052119962192,0.540186184383045,0.23674473558521,0.393528463494808,0.308534225774757,0.465067889500816,0,0,0,0.32833492815819,0.243206428637567,0,0.219550115291051,0,0.210289948564127,0,0.660837565967596,0,0.213288250535234,0.696710015581316,0,0.403367049246685,0,0,0,0.329397909448022,0,0,0,0,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0.280543279561274,0,0.295220295959204,0.156998727841375,0,0.296452627087149,0,0,0,0,0,0,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,0.744281895337007,0.312037673114561,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0.44292937929755,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0.325773918707152,0,0,0.728341908464944,0.604647113929502,0.943025398779491,0.295301892880773,0,0,0,0,0,0,0,0,0.540183282093931,0.258717367565509,0.214337035031592,0.354680467284547,0.713475270408282,0.329098041204242,0.608929898229199,0,0,0.220528398054962,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0,0.170870880797853,0,0.370389054739423,0.188368457004691,0.27338845544205,0.228778173206523,0.169978429993855,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0.269728692769641,0.247960367176008,0,0.518459893167171,0,0,0.149516546043979,0,0,0.129159823477731,0.506868376472335,0.234714477291508,0.13020438484395,0.104859344425711,0,0,0.632022241256357,0,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0.201652370273681,0,0,0,0.226730383615211,0.221985953374065,0.0897138566094757,0,0.19318959403219,0,0,0.214368379079066,0.501572104035363,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0,0.518936737920883,0.399024873401031,0.682934423016537,0.486213434136588,0.628839487883947,0.183843508450014,0,0.206035057238894,1.28367683836726,0.505394423527595,0,0.377252682772152,0.280924522409647,0.192075457214608,0.114870937911227,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0.342869252385415,0.70990322463735,0.715308569841963,0,0.282328141245992,0.25384382367503,0.365855945745545,0.263069711437843,0.814824683075171,0.561142271657738,0.118635018124174,0.394017929502254,0,0,0.771626443924566,0.499621155875892,0,0,0.382576664137687,0,0|short_description=p@chr19:55985121..55985142,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:55985121..55985142,+ | |||
|description=CAGE_peak_at_chr19:55985121..55985142,+ | |||
|id=chr19:55985121..55985142,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-20,23;CL:0000337,2.70e-20,23;CL:0002613,1.96e-19,3;CL:0000120,1.36e-18,3;CL:0002610,3.06e-18,3;CL:0000540,7.55e-14,33;CL:0000047,7.55e-14,33;CL:0000031,7.55e-14,33;CL:0000404,7.55e-14,33;CL:0002319,8.24e-13,43;CL:0000221,1.72e-12,44;CL:0000133,1.72e-12,44;CL:0000393,1.47e-11,39;CL:0000211,1.47e-11,39;CL:0002321,2.19e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,3.06e-18,3;UBERON:0002275,3.06e-18,3;UBERON:0000369,6.79e-12,5;UBERON:0002435,6.79e-12,5;UBERON:0000204,6.79e-12,5;UBERON:0010082,6.79e-12,5;UBERON:0001017,2.25e-10,73;UBERON:0001016,4.68e-10,75;UBERON:0000073,5.74e-08,54;UBERON:0002420,1.28e-07,8;UBERON:0007245,1.28e-07,8;UBERON:0010009,1.28e-07,8;UBERON:0010011,1.28e-07,8;UBERON:0000454,1.28e-07,8;UBERON:0004121,1.32e-07,95;UBERON:0000924,1.32e-07,95;UBERON:0006601,1.32e-07,95;UBERON:0002259,3.67e-07,1;UBERON:0002314,3.67e-07,1;UBERON:0004061,3.67e-07,1;UBERON:0006777,3.67e-07,1;UBERON:0005882,3.67e-07,1 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.159992422793407,0,0,0,0.215471232685889,0.190023419456374,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0.218025156380447,1.31811709640683,0.58328969722285,0.139986421625363,0,0,0,0,0.771778308107841,0,0,1.61853168687678,2.64495489636016,3.80298842103708,0,0,0,0,0.7104801149461,0.898800331555214,0.768436610643109,0.103689612308478,0,0,0.285650984403804,0,0,0.191690942036473,0,1.10115880999389,3.31987079021488,2.30409799884365,9.10015385338338,17.3826522844578,8.85552729946492,0.279182999001381,0,0.15279824777681,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0.259786004602869,1.06001872353102,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0.125666591329675,0.247194967734374,0,0,0.323533699894818,0,0,0,0,0.209446706813455,0,0,0,0,1.64769703345305,0,0.251308704225729,0,0,1.87009240103604,0.162241263067758,0.305518091550949,0.124406970610093,0,0.210441855886474,0.130120442962704,0,0,0.30140963567143,0.272145996605311,0,0,0.258703370739016,0.646703978798527,0.378212160335639,0.175951124163949,0,0.556094498451196,0,0,0.199034266818493,0,0,0,0.414251545071004,0.469052119962192,0.540186184383045,0.23674473558521,0.393528463494808,0.308534225774757,0.465067889500816,0,0,0,0.32833492815819,0.243206428637567,0,0.219550115291051,0,0.210289948564127,0,0.660837565967596,0,0.213288250535234,0.696710015581316,0,0.403367049246685,0,0,0,0.329397909448022,0,0,0,0,0.432276099749388,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0.280543279561274,0,0.295220295959204,0.156998727841375,0,0.296452627087149,0,0,0,0,0,0,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,0.744281895337007,0.312037673114561,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0.44292937929755,0.159454768657487,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0,0.325773918707152,0,0,0.728341908464944,0.604647113929502,0.943025398779491,0.295301892880773,0,0,0,0,0,0,0,0,0.540183282093931,0.258717367565509,0.214337035031592,0.354680467284547,0.713475270408282,0.329098041204242,0.608929898229199,0,0,0.220528398054962,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0,0.170870880797853,0,0.370389054739423,0.188368457004691,0.27338845544205,0.228778173206523,0.169978429993855,0,0,0,0.158167996790568,0,0.108005340821801,0,0.436725127492355,0.269728692769641,0.247960367176008,0,0.518459893167171,0,0,0.149516546043979,0,0,0.129159823477731,0.506868376472335,0.234714477291508,0.13020438484395,0.104859344425711,0,0,0.632022241256357,0,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0.201652370273681,0,0,0,0.226730383615211,0.221985953374065,0.0897138566094757,0,0.19318959403219,0,0,0.214368379079066,0.501572104035363,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0,0.518936737920883,0.399024873401031,0.682934423016537,0.486213434136588,0.628839487883947,0.183843508450014,0,0.206035057238894,1.28367683836726,0.505394423527595,0,0.377252682772152,0.280924522409647,0.192075457214608,0.114870937911227,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0.342869252385415,0.70990322463735,0.715308569841963,0,0.282328141245992,0.25384382367503,0.365855945745545,0.263069711437843,0.814824683075171,0.561142271657738,0.118635018124174,0.394017929502254,0,0,0.771626443924566,0.499621155875892,0,0,0.382576664137687,0,0 | |||
|short_description=p@chr19:55985121..55985142,+ | |||
}} |
Latest revision as of 09:02, 4 August 2015
Short description: | p@chr19:55985121..55985142, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55985121..55985142, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.70e-20 | 23 |
neuroblast (sensu Vertebrata) | 2.70e-20 | 23 |
striatum neuron | 1.96e-19 | 3 |
granule cell | 1.36e-18 | 3 |
raphe nuclei neuron | 3.06e-18 | 3 |
neuron | 7.55e-14 | 33 |
neuronal stem cell | 7.55e-14 | 33 |
neuroblast | 7.55e-14 | 33 |
electrically signaling cell | 7.55e-14 | 33 |
neural cell | 8.24e-13 | 43 |
ectodermal cell | 1.72e-12 | 44 |
neurectodermal cell | 1.72e-12 | 44 |
electrically responsive cell | 1.47e-11 | 39 |
electrically active cell | 1.47e-11 | 39 |
embryonic cell | 2.19e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 3.06e-18 | 3 |
reticular formation | 3.06e-18 | 3 |
corpus striatum | 6.79e-12 | 5 |
striatum | 6.79e-12 | 5 |
ventral part of telencephalon | 6.79e-12 | 5 |
future corpus striatum | 6.79e-12 | 5 |
central nervous system | 2.25e-10 | 73 |
nervous system | 4.68e-10 | 75 |
regional part of nervous system | 5.74e-08 | 54 |
basal ganglion | 1.28e-07 | 8 |
nuclear complex of neuraxis | 1.28e-07 | 8 |
aggregate regional part of brain | 1.28e-07 | 8 |
collection of basal ganglia | 1.28e-07 | 8 |
cerebral subcortex | 1.28e-07 | 8 |
ectoderm-derived structure | 1.32e-07 | 95 |
ectoderm | 1.32e-07 | 95 |
presumptive ectoderm | 1.32e-07 | 95 |
corpora quadrigemina | 3.67e-07 | 1 |
midbrain tectum | 3.67e-07 | 1 |
neural tube mantle layer | 3.67e-07 | 1 |
tectal plate | 3.67e-07 | 1 |
neural tube alar plate | 3.67e-07 | 1 |