FFCP PHASE1:Mm9::chr7:20282292..20282308,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=200 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:20282292..20282308,+ | |||
|description=CAGE_peak_at_chr7:20282292..20282308,+ | |description=CAGE_peak_at_chr7:20282292..20282308,+ | ||
|id=chr7:20282292..20282308,+ | |id=chr7:20282292..20282308,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.03e-09,4;CL:0000766,4.03e-09,4;CL:0000234,4.03e-09,4;CL:0000576,4.03e-09,4;CL:0000235,4.03e-09,4;CL:0000864,4.03e-09,4;CL:0002009,4.03e-09,4;CL:0000040,4.03e-09,4;CL:0000559,4.03e-09,4;CL:0000182,5.55e-08,5;CL:0002092,8.25e-08,3;CL:0002540,8.25e-08,3;CL:0000219,1.98e-07,54;CL:0000723,2.30e-07,91;CL:0000048,2.30e-07,91 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.92e-15!22;UBERON:0007499!3.92e-15!22;UBERON:0006925!3.92e-15!22;UBERON:0009497!3.92e-15!22;UBERON:0000015!3.92e-15!22;UBERON:0002423!3.92e-15!22;UBERON:0006235!3.92e-15!22;UBERON:0008835!3.92e-15!22;UBERON:0003894!3.92e-15!22;UBERON:0004161!3.92e-15!22;UBERON:0008836!3.92e-15!22;UBERON:0009854!5.22e-14!23;UBERON:0009856!5.22e-14!23;UBERON:0002365!3.05e-13!25;UBERON:0002330!3.05e-13!25;UBERON:0000025!1.10e-11!114;UBERON:0004111!1.50e-10!122;UBERON:0001017!9.87e-09!73;UBERON:0005743!9.87e-09!73;UBERON:0000073!4.45e-08!75;UBERON:0001016!4.45e-08!75;UBERON:0005172!8.45e-08!49;UBERON:0005173!8.45e-08!49;UBERON:0002417!8.45e-08!49;UBERON:0000916!8.45e-08!49;UBERON:0003914!9.54e-08!47;UBERON:0005256!1.83e-07!47;UBERON:0002616!3.53e-07!49;UBERON:0001049!6.24e-07!52;UBERON:0005068!6.24e-07!52;UBERON:0006241!6.24e-07!52;UBERON:0007135!6.24e-07!52;UBERON:0002020!7.22e-07!34;UBERON:0000955!8.17e-07!50;UBERON:0006238!8.17e-07!50 | |ontology_enrichment_uberon=UBERON:0002107!3.92e-15!22;UBERON:0007499!3.92e-15!22;UBERON:0006925!3.92e-15!22;UBERON:0009497!3.92e-15!22;UBERON:0000015!3.92e-15!22;UBERON:0002423!3.92e-15!22;UBERON:0006235!3.92e-15!22;UBERON:0008835!3.92e-15!22;UBERON:0003894!3.92e-15!22;UBERON:0004161!3.92e-15!22;UBERON:0008836!3.92e-15!22;UBERON:0009854!5.22e-14!23;UBERON:0009856!5.22e-14!23;UBERON:0002365!3.05e-13!25;UBERON:0002330!3.05e-13!25;UBERON:0000025!1.10e-11!114;UBERON:0004111!1.50e-10!122;UBERON:0001017!9.87e-09!73;UBERON:0005743!9.87e-09!73;UBERON:0000073!4.45e-08!75;UBERON:0001016!4.45e-08!75;UBERON:0005172!8.45e-08!49;UBERON:0005173!8.45e-08!49;UBERON:0002417!8.45e-08!49;UBERON:0000916!8.45e-08!49;UBERON:0003914!9.54e-08!47;UBERON:0005256!1.83e-07!47;UBERON:0002616!3.53e-07!49;UBERON:0001049!6.24e-07!52;UBERON:0005068!6.24e-07!52;UBERON:0006241!6.24e-07!52;UBERON:0007135!6.24e-07!52;UBERON:0002020!7.22e-07!34;UBERON:0000955!8.17e-07!50;UBERON:0006238!8.17e-07!50 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.09e-22,22;UBERON:0007499,5.09e-22,22;UBERON:0006925,5.09e-22,22;UBERON:0009497,5.09e-22,22;UBERON:0000015,5.09e-22,22;UBERON:0002423,5.09e-22,22;UBERON:0006235,5.09e-22,22;UBERON:0008835,5.09e-22,22;UBERON:0003894,5.09e-22,22;UBERON:0004161,5.09e-22,22;UBERON:0008836,5.09e-22,22;UBERON:0009854,7.09e-21,23;UBERON:0009856,7.09e-21,23;UBERON:0002365,7.29e-19,25;UBERON:0002330,7.29e-19,25;UBERON:0000025,6.35e-10,114;UBERON:0005256,8.19e-10,45;UBERON:0003914,3.23e-09,47;UBERON:0004111,8.65e-09,122;UBERON:0005172,1.23e-07,49;UBERON:0005173,1.23e-07,49;UBERON:0002417,1.23e-07,49;UBERON:0000916,1.23e-07,49;UBERON:0002371,1.59e-07,16 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39912375625629,0.315462165358238,0.137114433605739,0.42438965179803,0,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0,0,0,1.56478268869608,2.39827672018491,2.63623419281366,0.972149495371417,0.699932108126813,0,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,0,0,0,1.0165335962074,0,31.9464399634897,45.4878526780808,31.9716051725745,12.2836045312546,26.5110630671873,0.103689612308478,0.270011876663381,0,2.85650984403804,3.3130281142742,0,0,0,3.30347642998166,0.893811366596314,0.921639199537461,0.131886287730194,0,0.52091337055676,3.35019598801657,3.37657566019008,4.27835093775068,0.589257170947335,2.27794689278565,0,0,0,0.869593466105033,23.2314446784974,37.3984233539263,39.9380361811985,92.9180276950167,35.8421509677868,1.82577746171277,0,0,0,0.281686839553361,0,0,0,0,0,0,2.05530983494308,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0,0.125666591329675,0.247194967734374,0,0,0,0,0,0,0.292780797011547,0,0.255457055208591,0.11981512450592,0,0,0.299581278809645,0.915001205637253,0,0,0,0.41557608911912,0,0.203678727700633,0,0,0,0,0.229902104433473,0,0,0.0680364991513279,0,0.187403449119458,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.154267112887378,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0,0.219550115291051,0.134206418760372,0,0.102904612379284,0,0,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0.398282546508734,0,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.126473074248515,0.295220295959204,0.156998727841375,0.123397163921801,8.89357881261447,0.333690211432188,0.196558995113203,0.449724224769707,0.202860121388503,0.72353147925725,2.5462585178142,1.72617682470486,4.37765112292595,11.5315793538994,7.18841032636773,5.95425516269605,11.5453939052387,5.80931419278357,4.66433275156972,11.0962009913574,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0.289298117163023,6.03165135757089,3.80733978673097,0,0.275936746304732,0.160550589987792,0.468846746368813,0,0,0,0,0.430846795465598,1.91175038362042,0.668396022247182,0.849229592366497,0,1.16902343164525,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0.178368817602071,0,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0,0.0603129249281559,0.238744688006273,0.164140899745061,0.291480836629851,0,0.341741761595705,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.41326727862668,0,0.129614973291793,0,0,0,0.165458490457098,0,0.129159823477731,0,0,0.13020438484395,0.104859344425711,0,0,0.632022241256357,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0.233753804363138,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.84130094602871,0.572895513439397,2.92150409984269,1.37016503954128,3.0215755895588,2.02506750069542,0.900642406448441,0.906284817968409,0.51776031175182,0.103787347584177,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0,0.618105171716683,0,0,0,0,0,0.128050304809739,0.114870937911227,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0,0,0,0,0,0.118635018124174,0.197008964751127,1.22769312950907,0,0.385813221962283,0,0.467863216890817,0.214871054048298,0.191288332068843,0,0 | |phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39912375625629,0.315462165358238,0.137114433605739,0.42438965179803,0,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.683045484958446,0.485510353031154,0,0,0,1.56478268869608,2.39827672018491,2.63623419281366,0.972149495371417,0.699932108126813,0,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,0,0,0,1.0165335962074,0,31.9464399634897,45.4878526780808,31.9716051725745,12.2836045312546,26.5110630671873,0.103689612308478,0.270011876663381,0,2.85650984403804,3.3130281142742,0,0,0,3.30347642998166,0.893811366596314,0.921639199537461,0.131886287730194,0,0.52091337055676,3.35019598801657,3.37657566019008,4.27835093775068,0.589257170947335,2.27794689278565,0,0,0,0.869593466105033,23.2314446784974,37.3984233539263,39.9380361811985,92.9180276950167,35.8421509677868,1.82577746171277,0,0,0,0.281686839553361,0,0,0,0,0,0,2.05530983494308,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0,0.125666591329675,0.247194967734374,0,0,0,0,0,0,0.292780797011547,0,0.255457055208591,0.11981512450592,0,0,0.299581278809645,0.915001205637253,0,0,0,0.41557608911912,0,0.203678727700633,0,0,0,0,0.229902104433473,0,0,0.0680364991513279,0,0.187403449119458,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.154267112887378,0,0,0,0.16455984991348,0.164167464079095,0.243206428637567,0,0.219550115291051,0.134206418760372,0,0.102904612379284,0,0,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0.19496408711912,0,0,0.398282546508734,0,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.126473074248515,0.295220295959204,0.156998727841375,0.123397163921801,8.89357881261447,0.333690211432188,0.196558995113203,0.449724224769707,0.202860121388503,0.72353147925725,2.5462585178142,1.72617682470486,4.37765112292595,11.5315793538994,7.18841032636773,5.95425516269605,11.5453939052387,5.80931419278357,4.66433275156972,11.0962009913574,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0,0.289298117163023,6.03165135757089,3.80733978673097,0,0.275936746304732,0.160550589987792,0.468846746368813,0,0,0,0,0.430846795465598,1.91175038362042,0.668396022247182,0.849229592366497,0,1.16902343164525,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.129358683782755,0,0.177340233642274,0.178368817602071,0,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0,0.0603129249281559,0.238744688006273,0.164140899745061,0.291480836629851,0,0.341741761595705,0,0,0.188368457004691,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.41326727862668,0,0.129614973291793,0,0,0,0.165458490457098,0,0.129159823477731,0,0,0.13020438484395,0.104859344425711,0,0,0.632022241256357,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0.233753804363138,0,0,0,0,0,0.187682475451182,0,0,0,0.564751842617067,1.84130094602871,0.572895513439397,2.92150409984269,1.37016503954128,3.0215755895588,2.02506750069542,0.900642406448441,0.906284817968409,0.51776031175182,0.103787347584177,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0,0.618105171716683,0,0,0,0,0,0.128050304809739,0.114870937911227,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0,0,0,0,0,0.118635018124174,0.197008964751127,1.22769312950907,0,0.385813221962283,0,0.467863216890817,0.214871054048298,0.191288332068843,0,0 | ||
|short_description=p@chr7:20282292..20282308,+ | |short_description=p@chr7:20282292..20282308,+ | ||
}} | }} |
Latest revision as of 18:25, 4 August 2015
Short description: | p@chr7:20282292..20282308, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:20282292..20282308, + |
Coexpression cluster: | MCL_coexpression_mm9:200 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.03e-09 | 4 |
myeloid leukocyte | 4.03e-09 | 4 |
phagocyte | 4.03e-09 | 4 |
monocyte | 4.03e-09 | 4 |
macrophage | 4.03e-09 | 4 |
tissue-resident macrophage | 4.03e-09 | 4 |
macrophage dendritic cell progenitor | 4.03e-09 | 4 |
monoblast | 4.03e-09 | 4 |
promonocyte | 4.03e-09 | 4 |
hepatocyte | 5.55e-08 | 5 |
bone marrow cell | 8.25e-08 | 3 |
mesenchymal stem cell of the bone marrow | 8.25e-08 | 3 |
motile cell | 1.98e-07 | 54 |
somatic stem cell | 2.30e-07 | 91 |
multi fate stem cell | 2.30e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
liver | 5.09e-22 | 22 |
epithelial sac | 5.09e-22 | 22 |
digestive gland | 5.09e-22 | 22 |
epithelium of foregut-midgut junction | 5.09e-22 | 22 |
anatomical boundary | 5.09e-22 | 22 |
hepatobiliary system | 5.09e-22 | 22 |
foregut-midgut junction | 5.09e-22 | 22 |
hepatic diverticulum | 5.09e-22 | 22 |
liver primordium | 5.09e-22 | 22 |
septum transversum | 5.09e-22 | 22 |
liver bud | 5.09e-22 | 22 |
digestive tract diverticulum | 7.09e-21 | 23 |
sac | 7.09e-21 | 23 |
exocrine gland | 7.29e-19 | 25 |
exocrine system | 7.29e-19 | 25 |
tube | 6.35e-10 | 114 |
trunk mesenchyme | 8.19e-10 | 45 |
epithelial tube | 3.23e-09 | 47 |
anatomical conduit | 8.65e-09 | 122 |
abdomen element | 1.23e-07 | 49 |
abdominal segment element | 1.23e-07 | 49 |
abdominal segment of trunk | 1.23e-07 | 49 |
abdomen | 1.23e-07 | 49 |
bone marrow | 1.59e-07 | 16 |