FFCP PHASE1:Hg19::chr10:100027943..100027958,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:100027943..100027958,- to FFCP PHASE1:Hg19::chr10:100027943..100027958,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84171 | |EntrezGene=84171 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17171 | |HGNC=17171 | ||
|TSSclassifier=strong | |||
|UniProt=Q96JB6 | |UniProt=Q96JB6 | ||
|association_with_transcript=48bp_to_ENST00000260702,NM_032211,uc001kpa.1_5end | |||
|cluster_id=chr10:100027943..100027958,- | |||
|description=CAGE_peak_1_at_LOXL4_5end | |||
|id=chr10:100027943..100027958,- | |||
|ontology_enrichment_celltype=CL:0000055!6.72e-25!180;CL:0000057!1.76e-14!75;CL:0000680!1.02e-13!57;CL:0000056!1.02e-13!57;CL:0000355!1.02e-13!57;CL:0000183!1.35e-13!59;CL:0000187!8.15e-13!54;CL:0000192!3.51e-12!42;CL:0000514!3.51e-12!42;CL:0000393!3.03e-10!60;CL:0000211!3.03e-10!60;CL:0000359!3.15e-09!32;CL:0002620!3.93e-08!23;CL:0002334!1.58e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.51e-11;43!CL:0000359;5.71e-10;32!CL:0002334;4.24e-09;12!CL:0002620;1.57e-08;23!CL:0000134;1.91e-07;55!CL:0002320;7.08e-07;188!CL:0000048;9.88e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,2.72e-14,43;CL:0000514,2.72e-14,43;CL:0000057,2.97e-14,76;CL:0000680,4.72e-14,58;CL:0000056,4.72e-14,58;CL:0000355,4.72e-14,58;CL:0000187,5.80e-13,55;CL:0000359,1.61e-10,32;CL:0000393,2.63e-10,61;CL:0000211,2.63e-10,61;CL:0002334,4.65e-09,12;CL:0002620,1.65e-08,23;CL:0000048,3.76e-08,427;CL:0000723,1.78e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;5.51e-11;43!CL:0000355;4.49e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!4.92e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.25e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.30e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!3.25e-19!365;UBERON:0004290!6.06e-17!70;UBERON:0005256!6.46e-17!143;UBERON:0000914!5.16e-16!83;UBERON:0002329!5.16e-16!83;UBERON:0003077!5.16e-16!83;UBERON:0003059!5.16e-16!83;UBERON:0007282!5.16e-16!83;UBERON:0009618!5.16e-16!83;UBERON:0007285!5.16e-16!83;UBERON:0002385!6.82e-15!63;UBERON:0001015!6.82e-15!63;UBERON:0000383!6.82e-15!63;UBERON:0001134!1.25e-14!61;UBERON:0002036!1.25e-14!61;UBERON:0003082!1.25e-14!61;UBERON:0000481!1.83e-14!347;UBERON:0002100!1.25e-13!216;UBERON:0000486!1.84e-13!82;UBERON:0000490!1.03e-10!138;UBERON:0003104!1.17e-10!238;UBERON:0009142!1.17e-10!238;UBERON:0000119!5.38e-10!312;UBERON:0000483!6.55e-10!309;UBERON:0004573!1.38e-08!33;UBERON:0004571!1.38e-08!33;UBERON:0001637!3.71e-08!42;UBERON:0003509!3.71e-08!42;UBERON:0004572!3.71e-08!42;UBERON:0000468!5.28e-08!659;UBERON:0000477!1.77e-07!286;UBERON:0000467!2.15e-07!625;UBERON:0000480!3.07e-07!626;UBERON:0003102!3.49e-07!95;UBERON:0003914!7.08e-07!118;UBERON:0002199!7.78e-07!45;UBERON:0002416!7.78e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.44e-09;33!UBERON:0004571;8.44e-09;33!UBERON:0002385;6.41e-07;31!UBERON:0001015;6.41e-07;31!UBERON:0000383;6.41e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,1.85e-17,122;UBERON:0002329,3.99e-17,71;UBERON:0003059,3.99e-17,71;UBERON:0007282,3.99e-17,71;UBERON:0004290,3.99e-17,71;UBERON:0009618,3.99e-17,71;UBERON:0003077,1.29e-16,72;UBERON:0007285,1.29e-16,72;UBERON:0007524,4.03e-16,73;UBERON:0007503,8.35e-16,78;UBERON:0001134,3.55e-15,62;UBERON:0002036,3.55e-15,62;UBERON:0003082,3.55e-15,62;UBERON:0002385,5.50e-15,64;UBERON:0001015,5.50e-15,64;UBERON:0000383,5.50e-15,64;UBERON:0000486,2.43e-14,83;UBERON:0003104,2.58e-13,160;UBERON:0009142,2.58e-13,160;UBERON:0002100,1.56e-11,199;UBERON:0000490,1.69e-10,148;UBERON:0004573,1.18e-09,33;UBERON:0004571,1.18e-09,33;UBERON:0002199,1.62e-08,46;UBERON:0002416,1.62e-08,46;UBERON:0001637,2.21e-08,42;UBERON:0003509,2.21e-08,42;UBERON:0004572,2.21e-08,42;UBERON:0002097,5.30e-08,41 | |||
|phase1_expression=1.09007027562334,1.49870366723688,2.39622486963151,30.0219895059391,1.34088328328186,27.0424942471114,0,1.89515962028049,0.522371256399677,0.982935746006035,0,0.218441372130172,0.527533956456907,8.41611200128317,15.90707403494,4.70627602516243,2.41077811209591,10.2243412654232,10.2465887746006,0.123121058076788,4.28401451612931,1.25381888591235,11.4494394852423,5.47497700291537,23.2253883250385,0,0,0,0.393364276848904,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.03630773733273,4.34732710268003,1.80719576192283,6.51739283826656,2.75208386025565,4.7717156823066,10.705967146658,3.59232305223458,10.1995522832779,10.3645047117889,3.33996642519167,0,0,0,0,0,0.238490624305342,0.571994910780128,0.74291500265913,0,1.72046919021225,0,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0.24406205754817,0.735326160691737,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,21.3697939228987,12.0298986081351,149.357555957311,50.4832452517912,4.61068896857864,10.0921968025615,0,0,0.311211035399766,0.134710672069688,0.326923806226917,0.302714855289863,0,0.70296429550139,11.2377627658915,3.4228309292667,13.0020352080067,0.587172493218824,0,0.98315564691574,5.30800845262722,0.122834317311768,2.9964476540972,4.75201142912821,5.43987244412825,6.37112953356618,10.0606539854273,0.673344455816265,0.125118519871964,6.37247465613621,0.438977620880838,8.88814607817157,3.90618953157152,0.680593098960126,22.9618733681743,49.1181994282705,117.834137044716,21.3064678219926,55.9575233764723,22.930008064061,26.0563598864226,8.10126394758078,4.67697624773753,14.6411589061586,102.451537188879,11.8001621477733,42.2461415094771,10.3774661174469,2.20428770003634,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,275.351176900476,134.437356082313,70.4488098897651,16.2528774811193,16.6032280784005,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.435758888184812,0.237270619111097,0,0.196221465125346,0,0,1.40241773803446,2.8810180793198,7.3504355692771,1.26755034821831,10.8110993834539,1.18157981336281,0,0.491953754172454,0.857839051492628,0,0,0,0,0.651616610620649,0,2.88662684050547,2.43453850447661,6.69229557144183,0.144366447761074,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,0.720599767084807,0.25248486685276,0.126995788584338,0,0,0,1.02827492703324,0,0,0.224262168690721,1.30788020649984,0.22001485746285,4.13669490424889,3.57656445851882,0,5.31876233169741,9.36066932202295,0.771622122786426,1.41849132023278,0.799266537048298,0.857867961948885,1.62786481617433,0,0.325736184293735,0.710783897485092,0,44.0101490506996,13.0730018790044,13.7962727831239,0,0,0,0,0,19.9691667057006,6.08081488003833,4.72595541865882,3.04403637507822,0,0,0.215627574859517,0,0.76228387266739,0,0,0.335032530668698,0,0,0,0,9.44724486237377,6.00204625271613,2.71265023699736,0.831883446123229,1.07057393278297,1.89242898040722,7.84847480451178,20.1633886817572,0,2.0694614258501,1.99267679560631,17.1463326743784,93.2261183242529,2.54541504701563,3.43143423810856,0,0,0,0,0,0.907170879989041,7.44323423456331,4.29693525206575,3.08726103876381,30.8815349706239,12.7926812266676,11.5814823223397,71.2406718935957,25.9072285588461,152.880645494602,11.0050389058504,33.2322834677517,13.7128246582752,0.120859449591622,0.601519410909855,0,3.78887678943202,42.9735156495852,4.72047893853927,0,0.15403067420883,0.784349769176855,0,0.527758144464379,0,0,0.215915916102139,0,11.108803939298,25.5861784665975,0,0,2.91037181138832,0,0,4.10320200186223,2.62411716559765,2.60302715731442,0.9273691048295,0.732555718546747,1.15513299888823,0,3.25030123018261,41.7778217594815,17.5940707291662,0.154048617114644,0.307007349452259,0.964856007391714,0.214840489736547,0.145016693914229,0.852266274161009,39.9753840053851,0,0,0,0,9.761756535243,121.517565876627,6.2733354314454,3.38836938193698,15.4368748791936,5.21959795245044,3.52116016297448,2.00374841438788,0,2.53103539774981,1.71567174531442,6.90924036540602,1.28381696410176,61.0950236017799,0,1.43897966066652,2.47083326762449,2.82749765629647,12.9396788206922,3.17020642346017,9.26768603725758,1.95053495635836,29.0019052661228,4.22600587027022,26.8904825473732,9.89838023675989,155.951200935935,0.551365343546124,42.4600944154381,114.435681051232,4.6302042741335,3.9353685122798,2.02910376962704,1.54911749049875,1.40847801266121,1.43411352204052,2.16147890228867,0.7133421029625,8.86902660176495,9.07762831779956,7.24448764511784,0.379473173765715,0.699869440489966,0,1.34060455107157,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55507742614196,0,0,0,0.333698283423817,0,0,0,0,0,0,0,2.05111450980652,0,0,1.42068073403207,1.43246690842614,2.37571744666111,0,0,0.281338832821026,0.890469640183247,0,0,5.18044769452781,0,0.50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| ||
|short_description=p1@LOXL4 | |||
}} | }} |
Latest revision as of 17:30, 15 September 2015
Short description: | p1@LOXL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOXL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 48bp_to_ENST00000260702, NM_032211, uc001kpa.1_5end |
EntrezGene: | LOXL4 |
HGNC: | 17171 |
UniProt: | Q96JB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 2.72e-14 | 43 |
smooth muscle myoblast | 2.72e-14 | 43 |
fibroblast | 2.97e-14 | 76 |
muscle precursor cell | 4.72e-14 | 58 |
myoblast | 4.72e-14 | 58 |
multi-potent skeletal muscle stem cell | 4.72e-14 | 58 |
muscle cell | 5.80e-13 | 55 |
vascular associated smooth muscle cell | 1.61e-10 | 32 |
electrically responsive cell | 2.63e-10 | 61 |
electrically active cell | 2.63e-10 | 61 |
preadipocyte | 4.65e-09 | 12 |
skin fibroblast | 1.65e-08 | 23 |
multi fate stem cell | 3.76e-08 | 427 |
somatic stem cell | 1.78e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 1.85e-17 | 122 |
somite | 3.99e-17 | 71 |
presomitic mesoderm | 3.99e-17 | 71 |
presumptive segmental plate | 3.99e-17 | 71 |
dermomyotome | 3.99e-17 | 71 |
trunk paraxial mesoderm | 3.99e-17 | 71 |
paraxial mesoderm | 1.29e-16 | 72 |
presumptive paraxial mesoderm | 1.29e-16 | 72 |
dense mesenchyme tissue | 4.03e-16 | 73 |
epithelial vesicle | 8.35e-16 | 78 |
skeletal muscle tissue | 3.55e-15 | 62 |
striated muscle tissue | 3.55e-15 | 62 |
myotome | 3.55e-15 | 62 |
muscle tissue | 5.50e-15 | 64 |
musculature | 5.50e-15 | 64 |
musculature of body | 5.50e-15 | 64 |
multilaminar epithelium | 2.43e-14 | 83 |
mesenchyme | 2.58e-13 | 160 |
entire embryonic mesenchyme | 2.58e-13 | 160 |
trunk | 1.56e-11 | 199 |
unilaminar epithelium | 1.69e-10 | 148 |
systemic artery | 1.18e-09 | 33 |
systemic arterial system | 1.18e-09 | 33 |
integument | 1.62e-08 | 46 |
integumental system | 1.62e-08 | 46 |
artery | 2.21e-08 | 42 |
arterial blood vessel | 2.21e-08 | 42 |
arterial system | 2.21e-08 | 42 |
skin of body | 5.30e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.30e-10 | 14 |