FFCP PHASE1:Hg19::chr5:146889741..146889755,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1809 | |EntrezGene=1809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3015 | |HGNC=3015 | ||
|TSSclassifier=strong | |||
|UniProt=B3SXQ8,Q14195,Q6DEN2 | |UniProt=B3SXQ8,Q14195,Q6DEN2 | ||
|association_with_transcript=-122bp_to_ENST00000343218,NM_001197294_5end | |association_with_transcript=-122bp_to_ENST00000343218,NM_001197294_5end | ||
|cluster_id=chr5:146889741..146889755,- | |||
|description=CAGE_peak_12_at_DPYSL3_5end | |description=CAGE_peak_12_at_DPYSL3_5end | ||
|id=chr5:146889741..146889755,- | |id=chr5:146889741..146889755,- | ||
|ontology_enrichment_celltype=CL:0000055!4.36e-26!180;CL:0002321!2.35e-14!248;CL:0000220!9.39e-14!246;CL:0000222!4.78e-13!119;CL:0000393!4.83e-12!60;CL:0000211!4.83e-12!60;CL:0002319!1.79e-11!25;CL:0000133!2.99e-11!59;CL:0000187!3.21e-11!54;CL:0000183!3.60e-11!59;CL:0000680!3.22e-10!57;CL:0000056!3.22e-10!57;CL:0000355!3.22e-10!57;CL:0000192!4.38e-10!42;CL:0000514!4.38e-10!42;CL:0000057!6.26e-10!75;CL:0000095!7.10e-10!17;CL:0000123!7.10e-10!17;CL:0000333!1.56e-09!41;CL:0000243!4.29e-09!15;CL:0000125!4.29e-09!15;CL:0000030!4.29e-09!15;CL:0000339!4.29e-09!15;CL:0000221!7.37e-09!71;CL:0000359!2.41e-07!32 | |ontology_enrichment_celltype=CL:0000055!4.36e-26!180;CL:0002321!2.35e-14!248;CL:0000220!9.39e-14!246;CL:0000222!4.78e-13!119;CL:0000393!4.83e-12!60;CL:0000211!4.83e-12!60;CL:0002319!1.79e-11!25;CL:0000133!2.99e-11!59;CL:0000187!3.21e-11!54;CL:0000183!3.60e-11!59;CL:0000680!3.22e-10!57;CL:0000056!3.22e-10!57;CL:0000355!3.22e-10!57;CL:0000192!4.38e-10!42;CL:0000514!4.38e-10!42;CL:0000057!6.26e-10!75;CL:0000095!7.10e-10!17;CL:0000123!7.10e-10!17;CL:0000333!1.56e-09!41;CL:0000243!4.29e-09!15;CL:0000125!4.29e-09!15;CL:0000030!4.29e-09!15;CL:0000339!4.29e-09!15;CL:0000221!7.37e-09!71;CL:0000359!2.41e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002319;3.82e-12;25!CL:0000095;1.80e-10;17!CL:0000243;1.97e-10;15!CL:0000125;1.97e-10;15!CL:0000071;3.16e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.34e-14,250;CL:0000133,1.07e-13,59;CL:0002319,2.64e-12,25;CL:0000333,1.18e-11,41;CL:0000095,1.23e-10,17;CL:0000123,1.23e-10,17;CL:0000221,1.28e-10,72;CL:0000243,1.50e-10,15;CL:0000125,1.50e-10,15;CL:0000030,1.50e-10,15;CL:0000339,1.50e-10,15;CL:0000222,1.26e-09,121;CL:0000192,6.20e-08,43;CL:0000514,6.20e-08,43;CL:0000071,1.30e-07,18;CL:0002546,1.30e-07,18;CL:0000393,2.96e-07,61;CL:0000211,2.96e-07,61;CL:0000359,7.94e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000339;1.97e-10;15!CL:0000133;1.17e-07;59!CL:0002546;3.16e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.39e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.53e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.16e-17!79;UBERON:0007798!2.16e-17!79;UBERON:0004872!5.86e-16!84;UBERON:0000483!1.26e-15!309;UBERON:0000119!1.42e-15!312;UBERON:0001981!2.27e-15!60;UBERON:0007500!2.27e-15!60;UBERON:0004537!2.27e-15!60;UBERON:0006965!2.27e-15!60;UBERON:0000468!2.41e-14!659;UBERON:0000055!5.10e-14!69;UBERON:0000477!1.21e-13!286;UBERON:0004535!5.70e-13!110;UBERON:0000467!7.95e-13!625;UBERON:0000922!8.54e-13!612;UBERON:0000480!1.26e-12!626;UBERON:0001009!1.84e-12!113;UBERON:0003914!2.44e-12!118;UBERON:0000475!2.73e-12!365;UBERON:0004111!6.15e-12!241;UBERON:0000490!9.59e-12!138;UBERON:0002050!3.58e-11!605;UBERON:0005423!3.58e-11!605;UBERON:0000481!4.35e-11!347;UBERON:0000923!6.53e-11!604;UBERON:0005291!6.53e-11!604;UBERON:0006598!6.53e-11!604;UBERON:0002532!6.53e-11!604;UBERON:0001637!8.57e-11!42;UBERON:0003509!8.57e-11!42;UBERON:0004572!8.57e-11!42;UBERON:0005256!1.31e-10!143;UBERON:0000914!1.82e-10!83;UBERON:0002329!1.82e-10!83;UBERON:0003077!1.82e-10!83;UBERON:0003059!1.82e-10!83;UBERON:0007282!1.82e-10!83;UBERON:0009618!1.82e-10!83;UBERON:0007285!1.82e-10!83;UBERON:0000025!2.42e-10!194;UBERON:0004290!2.51e-10!70;UBERON:0000924!2.56e-10!173;UBERON:0006601!2.56e-10!173;UBERON:0002385!2.97e-10!63;UBERON:0001015!2.97e-10!63;UBERON:0000383!2.97e-10!63;UBERON:0004121!3.70e-10!169;UBERON:0001134!6.21e-10!61;UBERON:0002036!6.21e-10!61;UBERON:0003082!6.21e-10!61;UBERON:0000486!1.11e-08!82;UBERON:0004573!5.10e-08!33;UBERON:0004571!5.10e-08!33;UBERON:0000033!2.99e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0007500;2.04e-09;56!UBERON:0001981;2.04e-09;56!UBERON:0004537;2.04e-09;56!UBERON:0001637;6.48e-08;42!UBERON:0003509;6.48e-08;42!UBERON:0004572;6.48e-08;42!UBERON:0000055;1.36e-07;65!UBERON:0000487;1.70e-07;22!UBERON:0003914;2.10e-07;74!UBERON:0000970;2.55e-07;20!UBERON:0006914;2.59e-07;25!UBERON:0004638;3.16e-07;18!UBERON:0001986;3.16e-07;18!UBERON:0004852;3.16e-07;18!UBERON:0004573;3.58e-07;33!UBERON:0004571;3.58e-07;33!UBERON:0001801;3.65e-07;14!UBERON:0002049;4.40e-07;75!UBERON:0007798;4.40e-07;75!UBERON:0000490;5.43e-07;33!UBERON:0000020;8.06e-07;23!UBERON:0002104;8.57e-07;21!UBERON:0000019;8.64e-07;19!UBERON:0000047;8.64e-07;19!UBERON:0004088;8.64e-07;19!UBERON:0010230;8.64e-07;19!UBERON:0001638;8.68e-07;9!UBERON:0003920;8.68e-07;9!UBERON:0004582;8.68e-07;9 | |||
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| ||
|short_description=p12@DPYSL3 | |short_description=p12@DPYSL3 | ||
}} | }} |
Latest revision as of 22:21, 15 September 2015
Short description: | p12@DPYSL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_DPYSL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -122bp_to_ENST00000343218, NM_001197294_5end |
EntrezGene: | DPYSL3 |
HGNC: | 3015 |
UniProt: | B3SXQ8Q14195Q6DEN2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.34e-14 | 250 |
neurectodermal cell | 1.07e-13 | 59 |
neural cell | 2.64e-12 | 25 |
migratory neural crest cell | 1.18e-11 | 41 |
neuron associated cell | 1.23e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 1.23e-10 | 17 |
ectodermal cell | 1.28e-10 | 72 |
glial cell (sensu Vertebrata) | 1.50e-10 | 15 |
glial cell | 1.50e-10 | 15 |
glioblast | 1.50e-10 | 15 |
glioblast (sensu Vertebrata) | 1.50e-10 | 15 |
mesodermal cell | 1.26e-09 | 121 |
smooth muscle cell | 6.20e-08 | 43 |
smooth muscle myoblast | 6.20e-08 | 43 |
blood vessel endothelial cell | 1.30e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.30e-07 | 18 |
electrically responsive cell | 2.96e-07 | 61 |
electrically active cell | 2.96e-07 | 61 |
vascular associated smooth muscle cell | 7.94e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial tube open at both ends | 8.13e-16 | 59 |
blood vessel | 8.13e-16 | 59 |
blood vasculature | 8.13e-16 | 59 |
vascular cord | 8.13e-16 | 59 |
splanchnic layer of lateral plate mesoderm | 1.15e-14 | 83 |
vasculature | 2.51e-14 | 78 |
vascular system | 2.51e-14 | 78 |
vessel | 3.09e-13 | 68 |
epithelial tube | 2.10e-12 | 117 |
cardiovascular system | 4.02e-11 | 109 |
artery | 1.26e-10 | 42 |
arterial blood vessel | 1.26e-10 | 42 |
arterial system | 1.26e-10 | 42 |
circulatory system | 1.92e-10 | 112 |
unilaminar epithelium | 4.68e-09 | 148 |
tube | 7.64e-09 | 192 |
epithelium | 1.02e-08 | 306 |
anatomical conduit | 1.13e-08 | 240 |
cell layer | 2.10e-08 | 309 |
systemic artery | 2.42e-08 | 33 |
systemic arterial system | 2.42e-08 | 33 |
simple squamous epithelium | 5.26e-08 | 22 |
squamous epithelium | 8.68e-08 | 25 |
blood vessel endothelium | 1.30e-07 | 18 |
endothelium | 1.30e-07 | 18 |
cardiovascular system endothelium | 1.30e-07 | 18 |
embryo | 2.81e-07 | 592 |
anterior segment of eyeball | 5.71e-07 | 14 |
vein | 8.75e-07 | 9 |
venous blood vessel | 8.75e-07 | 9 |
venous system | 8.75e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.53e-08 | 14 |