FFCP PHASE2:Hg19::chr4:149363662..149363688,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:4306 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:7979 |TSSclass...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=4306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=7979 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B0ZBF7,P08235,F5GZH0,B0ZBF6,B0ZBF5,Q2NKL1 | ||
|association_with_transcript=0bp_to_ENST00000355292,ENST00000358102,ENST00000544252,NM_000901,NM_001166104_5end | |association_with_transcript=0bp_to_ENST00000355292,ENST00000358102,ENST00000544252,NM_000901,NM_001166104_5end | ||
|cluster_id=chr4:149363662..149363688,- | |cluster_id=chr4:149363662..149363688,- | ||
Latest revision as of 00:49, 16 September 2015
| Short description: | p6@NR3C2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_NR3C2_5end |
| Coexpression cluster: | C652_cerebellum_occipital_pineal_pituitary_medial_parietal_amygdala |
| Association with transcript: | 0bp_to_ENST00000355292, ENST00000358102, ENST00000544252, NM_000901, NM_001166104_5end |
| EntrezGene: | NR3C2 |
| HGNC: | 7979 |
| UniProt: | B0ZBF7P08235F5GZH0B0ZBF6B0ZBF5Q2NKL1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@NR3C2 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mature alpha-beta T cell | 1.12e-09 | 18 |
| alpha-beta T cell | 1.12e-09 | 18 |
| immature T cell | 1.12e-09 | 18 |
| mature T cell | 1.12e-09 | 18 |
| immature alpha-beta T cell | 1.12e-09 | 18 |
Showing 1 to 5 of 5 entries
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 1.17e-63 | 56 |
| neural rod | 1.17e-63 | 56 |
| future spinal cord | 1.17e-63 | 56 |
| neural keel | 1.17e-63 | 56 |
| regional part of nervous system | 2.62e-61 | 53 |
| regional part of brain | 2.62e-61 | 53 |
| adult organism | 1.04e-59 | 114 |
| brain | 2.17e-52 | 68 |
| future brain | 2.17e-52 | 68 |
| central nervous system | 6.24e-49 | 81 |
Showing 1 to 10 of 73 entries
