FFCP PHASE1:Hg19::chr7:1272500..1272513,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340260 | |EntrezGene=340260 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33194 | |HGNC=33194 | ||
|TSSclassifier=strong | |||
|UniProt=A6NJT0 | |UniProt=A6NJT0 | ||
|association_with_transcript=-29bp_to_ENST00000316333_5end | |association_with_transcript=-29bp_to_ENST00000316333_5end | ||
|cluster_id=chr7:1272500..1272513,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_1_at_UNCX_5end | |description=CAGE_peak_1_at_UNCX_5end | ||
|id=chr7:1272500..1272513,+ | |id=chr7:1272500..1272513,+ | ||
|ontology_enrichment_celltype=CL:0000242!8.68e-11!2;CL:0002319!7.37e-10!25;CL:0002322!1.57e-08!5;CL:0000133!5.03e-07!59 | |ontology_enrichment_celltype=CL:0000242!8.68e-11!2;CL:0002319!7.37e-10!25;CL:0002322!1.57e-08!5;CL:0000133!5.03e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000123;1.00e-31;2!CL:0000242;1.00e-31;2!CL:0000312;2.52e-13;5!CL:0000095;3.02e-13;17!CL:0000240;2.91e-11;6!CL:0000311;2.91e-11;6!CL:0000079;2.91e-11;6!CL:0000237;2.91e-11;6!CL:0002319;2.09e-09;25!CL:0000362;8.31e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.00e-31,2;CL:0000312,2.52e-13,5;CL:0000095,3.07e-13,17;CL:0000123,3.07e-13,17;CL:0000240,2.91e-11,6;CL:0000311,2.91e-11,6;CL:0000079,2.91e-11,6;CL:0000237,2.91e-11,6;CL:0000036,2.91e-11,6;CL:0000357,2.91e-11,6;CL:0000114,2.91e-11,6;CL:0002319,2.11e-09,25;CL:0000333,6.66e-09,41;CL:0000362,8.31e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.96e-47;3!CL:0000357;2.91e-11;6!CL:0000114;2.91e-11;6!UBERON:0003918;5.03e-07;10!UBERON:0007687;5.03e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;5.06e-12;11!DOID:3193;7.79e-09;2!DOID:962;7.79e-09;2!DOID:1115;2.17e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,5.25e-12,11;DOID:3193,8.09e-09,2;DOID:962,8.09e-09,2;DOID:1115,2.17e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0004733!6.86e-30!12;UBERON:0002028!6.86e-30!12;UBERON:0007277!6.86e-30!12;UBERON:0003076!3.74e-29!15;UBERON:0003057!3.74e-29!15;UBERON:0004732!1.82e-27!13;UBERON:0002680!9.61e-25!9;UBERON:0001895!9.61e-25!9;UBERON:0010092!9.61e-25!9;UBERON:0001017!6.72e-21!82;UBERON:0002298!1.03e-19!8;UBERON:0005743!1.03e-19!86;UBERON:0000073!2.57e-19!94;UBERON:0001016!2.57e-19!94;UBERON:0001049!3.15e-16!57;UBERON:0005068!3.15e-16!57;UBERON:0006241!3.15e-16!57;UBERON:0007135!3.15e-16!57;UBERON:0000955!1.64e-14!69;UBERON:0006238!1.64e-14!69;UBERON:0000988!2.84e-14!3;UBERON:0006331!7.31e-14!3;UBERON:0002616!1.71e-13!59;UBERON:0002346!1.72e-13!90;UBERON:0002037!4.34e-13!6;UBERON:0006215!4.34e-13!6;UBERON:0003075!1.26e-12!86;UBERON:0007284!1.26e-12!86;UBERON:0000924!1.72e-11!173;UBERON:0006601!1.72e-11!173;UBERON:0004121!9.57e-11!169;UBERON:0001897!4.42e-10!2;UBERON:0002148!6.08e-10!2;UBERON:0009662!6.08e-10!2;UBERON:0007023!1.48e-09!115;UBERON:0001896!5.82e-07!3;UBERON:0005290!5.82e-07!3;UBERON:0010096!5.82e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.91e-24;6!UBERON:0004733;6.97e-21;12!UBERON:0002028;6.97e-21;12!UBERON:0004732;2.62e-19;13!UBERON:0002680;2.93e-16;9!UBERON:0001895;2.93e-16;9!UBERON:0003714;7.79e-09;2!UBERON:0001016;9.72e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,4.91e-24,6;UBERON:0006215,4.91e-24,6;UBERON:0004733,6.97e-21,12;UBERON:0002028,6.97e-21,12;UBERON:0007277,6.97e-21,12;UBERON:0004732,2.62e-19,13;UBERON:0003076,8.75e-17,15;UBERON:0003057,8.75e-17,15;UBERON:0002680,2.93e-16,9;UBERON:0001895,2.93e-16,9;UBERON:0010092,2.93e-16,9;UBERON:0003714,8.09e-09,2;UBERON:0001016,1.06e-07,89;UBERON:0000955,1.13e-07,68;UBERON:0006238,1.13e-07,68;UBERON:0010371,9.87e-07,104 | |||
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| ||
|short_description=p1@UNCX | |short_description=p1@UNCX | ||
}} | }} |
Latest revision as of 02:25, 16 September 2015
Short description: | p1@UNCX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UNCX_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -29bp_to_ENST00000316333_5end |
EntrezGene: | UNCX |
HGNC: | 33194 |
UniProt: | A6NJT0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.00e-31 | 2 |
keratinocyte | 2.52e-13 | 5 |
neuron associated cell | 3.07e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 3.07e-13 | 17 |
stratified squamous epithelial cell | 2.91e-11 | 6 |
keratin accumulating cell | 2.91e-11 | 6 |
stratified epithelial cell | 2.91e-11 | 6 |
keratinizing barrier epithelial cell | 2.91e-11 | 6 |
epithelial fate stem cell | 2.91e-11 | 6 |
stratified epithelial stem cell | 2.91e-11 | 6 |
surface ectodermal cell | 2.91e-11 | 6 |
neural cell | 2.11e-09 | 25 |
migratory neural crest cell | 6.66e-09 | 41 |
epidermal cell | 8.31e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 4.91e-24 | 6 |
rhombic lip | 4.91e-24 | 6 |
segmental subdivision of hindbrain | 6.97e-21 | 12 |
hindbrain | 6.97e-21 | 12 |
presumptive hindbrain | 6.97e-21 | 12 |
segmental subdivision of nervous system | 2.62e-19 | 13 |
posterior neural tube | 8.75e-17 | 15 |
chordal neural plate | 8.75e-17 | 15 |
regional part of metencephalon | 2.93e-16 | 9 |
metencephalon | 2.93e-16 | 9 |
future metencephalon | 2.93e-16 | 9 |
neural tissue | 8.09e-09 | 2 |
nervous system | 1.06e-07 | 89 |
brain | 1.13e-07 | 68 |
future brain | 1.13e-07 | 68 |
ecto-epithelium | 9.87e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 5.25e-12 | 11 |
peripheral nerve sheath neoplasm | 8.09e-09 | 2 |
neurofibroma | 8.09e-09 | 2 |
sarcoma | 2.17e-07 | 20 |