FFCP PHASE1:Hg19::chr7:127544641..127544652,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27044 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30646 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-26bp_to_ENST00000492840_5end | |||
|cluster_id=chr7:127544641..127544652,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_12_at_SND1_5end | |||
|id=chr7:127544641..127544652,+ | |||
|ontology_enrichment_celltype=CL:0000819!3.41e-07!1 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease=DOID:0060073!3.41e-07!1;DOID:8675!3.41e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!7.86e-28!86;UBERON:0003075!1.49e-25!86;UBERON:0007284!1.49e-25!86;UBERON:0000073!7.99e-25!94;UBERON:0001016!7.99e-25!94;UBERON:0002346!3.10e-24!90;UBERON:0001017!1.02e-23!82;UBERON:0000955!7.15e-23!69;UBERON:0006238!7.15e-23!69;UBERON:0001049!1.51e-22!57;UBERON:0005068!1.51e-22!57;UBERON:0006241!1.51e-22!57;UBERON:0007135!1.51e-22!57;UBERON:0002616!1.44e-21!59;UBERON:0001950!8.41e-21!20;UBERON:0001896!7.15e-19!3;UBERON:0005290!7.15e-19!3;UBERON:0010096!7.15e-19!3;UBERON:0002619!7.21e-19!22;UBERON:0003056!3.12e-18!61;UBERON:0000033!3.45e-18!123;UBERON:0000153!3.81e-17!129;UBERON:0007811!3.81e-17!129;UBERON:0000956!1.59e-16!25;UBERON:0000203!1.59e-16!25;UBERON:0004121!7.84e-15!169;UBERON:0002780!1.02e-14!41;UBERON:0001890!1.02e-14!41;UBERON:0006240!1.02e-14!41;UBERON:0000924!2.20e-14!173;UBERON:0006601!2.20e-14!173;UBERON:0003080!2.51e-14!42;UBERON:0003127!2.88e-13!2;UBERON:0001869!1.03e-12!32;UBERON:0007023!1.08e-12!115;UBERON:0002791!2.67e-12!33;UBERON:0001871!4.16e-12!7;UBERON:0002020!6.60e-12!34;UBERON:0003528!6.60e-12!34;UBERON:0001893!6.60e-12!34;UBERON:0000966!1.73e-11!5;UBERON:0005388!1.73e-11!5;UBERON:0001802!1.73e-11!5;UBERON:0003076!7.20e-10!15;UBERON:0003057!7.20e-10!15;UBERON:0004733!3.78e-08!12;UBERON:0002028!3.78e-08!12;UBERON:0007277!3.78e-08!12;UBERON:0004732!1.58e-07!13;UBERON:0000970!1.73e-07!20;UBERON:0000989!1.85e-07!1;UBERON:0008811!1.85e-07!1;UBERON:0006258!1.85e-07!1;UBERON:0005876!1.85e-07!1;UBERON:0004874!1.85e-07!1;UBERON:0000064!1.87e-07!219;UBERON:0002298!2.24e-07!8;UBERON:0002104!4.06e-07!21;UBERON:0002581!4.89e-07!1;UBERON:0003296!5.36e-07!4;UBERON:0010133!5.36e-07!4;UBERON:0002372!6.20e-07!1;UBERON:0001961!6.20e-07!1;UBERON:0001744!6.20e-07!1;UBERON:0001735!6.20e-07!1;UBERON:0002022!7.40e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.03e-17;3!UBERON:0005290;1.03e-17;3!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0002298;1.50e-09;6!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24!UBERON:0001871;2.26e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.46e-18,3;UBERON:0005290,9.46e-18,3;UBERON:0010096,9.46e-18,3;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0002298,1.44e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0001871,2.35e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927443239800615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,1.20990716048664,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72022758707021,0.332787154610557,0.18628920882415,0.415045904808692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0.672567444437648,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0,0,0,0,0.913158720509496,0,0,5.21778772489591,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.430333232356058,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@SND1 | |||
}} |
Latest revision as of 02:46, 16 September 2015
Short description: | p12@SND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SND1_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -26bp_to_ENST00000492840_5end |
EntrezGene: | SND1 |
HGNC: | 30646 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 9.46e-18 | 3 |
myelencephalon | 9.46e-18 | 3 |
future myelencephalon | 9.46e-18 | 3 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
brainstem | 1.44e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
temporal lobe | 2.35e-08 | 6 |