FFCP PHASE2:Hg19::chr2:238767388..238767402,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:10267 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9843 |TSSclas...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=10267 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9843 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=E9PC20 | ||
|association_with_transcript=-133bp_to_ENST00000404910_5end | |association_with_transcript=-133bp_to_ENST00000404910_5end | ||
|cluster_id=chr2:238767388..238767402,+ | |cluster_id=chr2:238767388..238767402,+ | ||
Latest revision as of 05:08, 16 September 2015
| Short description: | p4@RAMP1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_RAMP1_5end |
| Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
| Association with transcript: | -133bp_to_ENST00000404910_5end |
| EntrezGene: | RAMP1 |
| HGNC: | 9843 |
| UniProt: | E9PC20 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@RAMP1 |
|---|
0
5
10
15
20
25
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| conventional dendritic cell | 2.44e-53 | 8 |
| dendritic cell | 1.24e-43 | 10 |
| Langerhans cell | 1.53e-43 | 5 |
| immature conventional dendritic cell | 1.25e-20 | 5 |
| common dendritic progenitor | 1.25e-20 | 5 |
| CD1a-positive Langerhans cell | 4.69e-08 | 2 |
| immature CD1a-positive Langerhans cell | 4.69e-08 | 2 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| medulla oblongata | 4.38e-40 | 3 |
| myelencephalon | 4.38e-40 | 3 |
| future myelencephalon | 4.38e-40 | 3 |
| brainstem | 1.99e-20 | 6 |
| posterior neural tube | 1.82e-14 | 15 |
| chordal neural plate | 1.82e-14 | 15 |
| epididymis | 3.15e-14 | 1 |
| segmental subdivision of hindbrain | 1.57e-10 | 12 |
| hindbrain | 1.57e-10 | 12 |
| presumptive hindbrain | 1.57e-10 | 12 |
Showing 1 to 10 of 18 entries
