FFCP PHASE1:Hg19::chr2:109237834..109237845,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=127bp_to_ENST00000449684_5end | |association_with_transcript=127bp_to_ENST00000449684_5end | ||
|cluster_id=chr2:109237834..109237845,+ | |||
|coexpression_cluster_id=C854 | |coexpression_cluster_id=C854 | ||
|description=CAGE_peak_21_at_LIMS1_5end | |description=CAGE_peak_21_at_LIMS1_5end | ||
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|ontology_enrichment_celltype=CL:0000542!1.29e-17!53;CL:0000051!1.29e-17!53;CL:0000838!8.71e-17!52;CL:0000791!3.69e-14!18;CL:0000789!3.69e-14!18;CL:0002420!3.69e-14!18;CL:0002419!3.69e-14!18;CL:0000790!3.69e-14!18;CL:0000084!1.36e-13!25;CL:0000827!1.36e-13!25;CL:0000625!7.78e-10!11;CL:0000738!1.32e-08!140;CL:0000624!4.69e-07!6;CL:0002087!6.45e-07!119 | |ontology_enrichment_celltype=CL:0000542!1.29e-17!53;CL:0000051!1.29e-17!53;CL:0000838!8.71e-17!52;CL:0000791!3.69e-14!18;CL:0000789!3.69e-14!18;CL:0002420!3.69e-14!18;CL:0002419!3.69e-14!18;CL:0000790!3.69e-14!18;CL:0000084!1.36e-13!25;CL:0000827!1.36e-13!25;CL:0000625!7.78e-10!11;CL:0000738!1.32e-08!140;CL:0000624!4.69e-07!6;CL:0002087!6.45e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.81e-22;18!CL:0000789;2.81e-22;18!CL:0002419;2.81e-22;18!CL:0000084;1.29e-15;25!CL:0000624;7.99e-15;6!CL:0000625;1.45e-11;11!CL:0000898;2.18e-08;3!CL:0002553;4.84e-07;1!CL:0000895;5.13e-07;1 | |ontology_enrichment_celltype_v019=CL:0000791;2.81e-22;18!CL:0000789;2.81e-22;18!CL:0002419;2.81e-22;18!CL:0000084;1.29e-15;25!CL:0000624;7.99e-15;6!CL:0000625;1.45e-11;11!CL:0000898;2.18e-08;3!CL:0002553;4.84e-07;1!CL:0000895;5.13e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.75e-22,18;CL:0000789,3.75e-22,18;CL:0002420,3.75e-22,18;CL:0002419,3.75e-22,18;CL:0000790,3.75e-22,18;CL:0000084,1.58e-15,25;CL:0000827,1.58e-15,25;CL:0000624,7.34e-15,6;CL:0000625,1.97e-11,11;CL:0000838,4.98e-10,52;CL:0000542,8.40e-10,53;CL:0000051,8.40e-10,53;CL:0000898,2.39e-08,3;CL:0002553,4.85e-07,1;CL:0000810,5.13e-07,1;CL:0000895,5.13e-07,1;CL:0002436,5.13e-07,1;CL:0002427,5.13e-07,1;CL:0002428,5.13e-07,1;CL:0002429,5.13e-07,1;CL:0002433,5.13e-07,1;CL:0002431,5.13e-07,1;CL:0002432,5.13e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;2.81e-22;18!CL:0002427;5.13e-07;1!UBERON:0000358;8.25e-07;1 | |ontology_enrichment_development_v019=CL:0000790;2.81e-22;18!CL:0002427;5.13e-07;1!UBERON:0000358;8.25e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.93e-08!15;UBERON:0000179!2.93e-08!15;UBERON:0000463!2.93e-08!15 | |ontology_enrichment_uberon=UBERON:0000178!2.93e-08!15;UBERON:0000179!2.93e-08!15;UBERON:0000463!2.93e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.61e-11;2!UBERON:0005058;2.61e-11;2!UBERON:0009113;2.61e-11;2 | |ontology_enrichment_uberon_v019=UBERON:0002370;2.61e-11;2!UBERON:0005058;2.61e-11;2!UBERON:0009113;2.61e-11;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.31e-12,4;UBERON:0005058,1.31e-12,4;UBERON:0009113,1.31e-12,4;UBERON:0003295,1.31e-12,4;UBERON:0005562,1.31e-12,4;UBERON:0003351,1.46e-08,6;UBERON:0004177,2.12e-07,7;UBERON:0005057,2.12e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.246301768349837,0.393553906568396,0.393364276848904,0,0.154816123316076,0,0,0,0,0.568676929949686,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32208974556972,0,0,0,0,0,0,0,1.7703879310245,0.786021525498329,3.08402248499264,0.167186495390678,0,0.946895611469467,0,2.56244050835899,2.06224135232386,3.76607620792156,1.89562704635511,2.17755243533648,2.86130564631732,0.328875809207352,0.552700035571697,1.44901542867526,0.444859689486181,0.267540828089713,1.04535523804977,3.28597093822942,5.74830740402882,7.90343124610049,9.61474829674111,1.27426165729639,0,1.90090408889675,1.05402583354441,1.27986611154418,0,1.18388626022008,0.821127996921047,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,1.87467667973554,0.335964256397719,0.283550194484773,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.513372145118994,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0,0,0,0,0,0.0770153371044148,0,1.46139224653261,0.422206515571503,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,1.15314040419064,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0.43050537267123,0,0,0.689170200620878,1.52234282769651,1.52927441428475,0.569647187174163,0.476463550915578,0,0.648473311192717,0,0.79312517629427,0,0,0,0.371606350251437,0,0.569134746787313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0.445234820091624,0,1.05562704063997,0,0.552567831062295,8.81764617489966,0,1.10776324914963,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0.461701551022782,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0.489698424477443,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0.0882561266915003,0,0,0,0,0,0,0,0,0,1.71804894248874,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,2.249738915515,0.77380195455795,0,0,0.236417121897595,0.104909176269996,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790446527591777,0.974340787047167,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0.19998739585493,0,0.172214979660816,0,0,0,0.622077260032973,0,0.970423302570136,0,0,0,0,0,0,0,0,6.40456598628376,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0.147856086217045,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0,0,0,0.078493092850514,0,0.280272163313789,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0.423387050190929,0.22910686854405,0.31020638566432,1.91107787795487,0.111855431797792,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0.150962843566674,0.231522474323834,0,1.41095188908457,0,0.235676547101626,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.213233981900981,0,1.35636710655613,1.48979314310059,0,0.0636471582781649,0,0,0,0.740872583160463,0.143444410785353,0,0.162806537221949,0,0,0,2.34640942403454,0.122241444182866,0.406896178315738,0,0,0.641136984606466 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| ||
|short_description=p21@LIMS1 | |short_description=p21@LIMS1 | ||
}} | }} |
Latest revision as of 06:37, 16 September 2015
Short description: | p21@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | 127bp_to_ENST00000449684_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.75e-22 | 18 |
alpha-beta T cell | 3.75e-22 | 18 |
immature T cell | 3.75e-22 | 18 |
mature T cell | 3.75e-22 | 18 |
immature alpha-beta T cell | 3.75e-22 | 18 |
T cell | 1.58e-15 | 25 |
pro-T cell | 1.58e-15 | 25 |
CD4-positive, alpha-beta T cell | 7.34e-15 | 6 |
CD8-positive, alpha-beta T cell | 1.97e-11 | 11 |
lymphoid lineage restricted progenitor cell | 4.98e-10 | 52 |
lymphocyte | 8.40e-10 | 53 |
common lymphoid progenitor | 8.40e-10 | 53 |
naive T cell | 2.39e-08 | 3 |
lung fibroblast | 4.85e-07 | 1 |
CD4-positive, alpha-beta thymocyte | 5.13e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.13e-07 | 1 |
mature CD4 single-positive thymocyte | 5.13e-07 | 1 |
resting double-positive thymocyte | 5.13e-07 | 1 |
double-positive blast | 5.13e-07 | 1 |
CD69-positive double-positive thymocyte | 5.13e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.13e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.13e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.13e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.31e-12 | 4 |
hemolymphoid system gland | 1.31e-12 | 4 |
thymic region | 1.31e-12 | 4 |
pharyngeal gland | 1.31e-12 | 4 |
thymus primordium | 1.31e-12 | 4 |
pharyngeal epithelium | 1.46e-08 | 6 |
hemopoietic organ | 2.12e-07 | 7 |
immune organ | 2.12e-07 | 7 |