FFCP PHASE1:Hg19::chr2:241976620..241976644,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25992 | |EntrezGene=25992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |HGNC=24696 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000401644_5end | |association_with_transcript=0bp_to_ENST00000401644_5end | ||
|cluster_id=chr2:241976620..241976644,+ | |||
|coexpression_cluster_id=C4211 | |||
|description=CAGE_peak_3_at_SNED1_5end | |description=CAGE_peak_3_at_SNED1_5end | ||
|id=chr2:241976620..241976644,+ | |id=chr2:241976620..241976644,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.58e-36!53;CL:0000051!1.58e-36!53;CL:0000838!5.12e-35!52;CL:0002087!7.42e-33!119;CL:0000738!4.38e-31!140;CL:0002031!1.18e-26!124;CL:0000945!4.54e-23!24;CL:0000826!4.54e-23!24;CL:0000988!1.33e-22!182;CL:0000037!1.07e-21!172;CL:0000566!1.07e-21!172;CL:0000236!3.72e-20!14;CL:0002032!1.74e-18!165;CL:0000837!1.74e-18!165;CL:0000791!1.07e-14!18;CL:0000789!1.07e-14!18;CL:0002420!1.07e-14!18;CL:0002419!1.07e-14!18;CL:0000790!1.07e-14!18;CL:0000084!3.11e-11!25;CL:0000827!3.11e-11!25;CL:0000080!2.24e-10!6;CL:0000624!2.55e-10!6;CL:0000625!7.19e-08!11 | |ontology_enrichment_celltype=CL:0000542!1.58e-36!53;CL:0000051!1.58e-36!53;CL:0000838!5.12e-35!52;CL:0002087!7.42e-33!119;CL:0000738!4.38e-31!140;CL:0002031!1.18e-26!124;CL:0000945!4.54e-23!24;CL:0000826!4.54e-23!24;CL:0000988!1.33e-22!182;CL:0000037!1.07e-21!172;CL:0000566!1.07e-21!172;CL:0000236!3.72e-20!14;CL:0002032!1.74e-18!165;CL:0000837!1.74e-18!165;CL:0000791!1.07e-14!18;CL:0000789!1.07e-14!18;CL:0002420!1.07e-14!18;CL:0002419!1.07e-14!18;CL:0000790!1.07e-14!18;CL:0000084!3.11e-11!25;CL:0000827!3.11e-11!25;CL:0000080!2.24e-10!6;CL:0000624!2.55e-10!6;CL:0000625!7.19e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.45e-48;24!CL:0000236;1.53e-37;13!CL:0000542;3.74e-25;53!CL:0000624;1.44e-14;6!CL:0000898;1.98e-11;3!CL:0000815;1.95e-08;2!CL:0000792;1.95e-08;2!CL:0002677;1.95e-08;2!CL:0002087;2.40e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.10e-48,24;CL:0000826,1.10e-48,24;CL:0000542,8.68e-42,53;CL:0000051,8.68e-42,53;CL:0000236,7.34e-41,14;CL:0000838,3.36e-39,52;CL:0002087,4.50e-18,115;CL:0000738,2.13e-15,136;CL:0000624,1.42e-14,6;CL:0002031,3.05e-14,120;CL:0000988,3.08e-13,177;CL:0000898,2.28e-11,3;CL:0000037,4.24e-11,168;CL:0002032,5.75e-10,161;CL:0000837,5.75e-10,161;CL:0000785,1.54e-08,2;CL:0000955,1.54e-08,2;CL:0000818,1.54e-08,2;CL:0000954,1.54e-08,2;CL:0000816,1.54e-08,2;CL:0000815,2.14e-08,2;CL:0000792,2.14e-08,2;CL:0002677,2.14e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000051;3.74e-25;53!CL:0000954;1.60e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.17e-11!15;UBERON:0000179!1.17e-11!15;UBERON:0000463!1.17e-11!15;UBERON:0002390!9.18e-11!102;UBERON:0003061!9.18e-11!102;UBERON:0002193!1.50e-10!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.75e-17;15!UBERON:0000179;8.75e-17;15!UBERON:0000463;8.75e-17;15!UBERON:0002390;2.29e-11;32!UBERON:0002370;2.26e-08;2!UBERON:0005058;2.26e-08;2!UBERON:0009113;2.26e-08;2!UBERON:0002193;4.14e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.33e-16,15;UBERON:0000179,1.33e-16,15;UBERON:0000463,1.33e-16,15;UBERON:0002370,1.32e-08,4;UBERON:0005058,1.32e-08,4;UBERON:0009113,1.32e-08,4;UBERON:0003295,1.32e-08,4;UBERON:0005562,1.32e-08,4 | |||
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| ||
|short_description=p3@SNED1 | |short_description=p3@SNED1 | ||
}} | }} |
Latest revision as of 09:24, 16 September 2015
Short description: | p3@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SNED1_5end |
Coexpression cluster: | C4211_diffuse_CD4_lymphoma_acute_thymus_CD19_appendix |
Association with transcript: | 0bp_to_ENST00000401644_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.10e-48 | 24 |
pro-B cell | 1.10e-48 | 24 |
lymphocyte | 8.68e-42 | 53 |
common lymphoid progenitor | 8.68e-42 | 53 |
B cell | 7.34e-41 | 14 |
lymphoid lineage restricted progenitor cell | 3.36e-39 | 52 |
nongranular leukocyte | 4.50e-18 | 115 |
leukocyte | 2.13e-15 | 136 |
CD4-positive, alpha-beta T cell | 1.42e-14 | 6 |
hematopoietic lineage restricted progenitor cell | 3.05e-14 | 120 |
hematopoietic cell | 3.08e-13 | 177 |
naive T cell | 2.28e-11 | 3 |
hematopoietic stem cell | 4.24e-11 | 168 |
hematopoietic oligopotent progenitor cell | 5.75e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.75e-10 | 161 |
mature B cell | 1.54e-08 | 2 |
pre-B-II cell | 1.54e-08 | 2 |
transitional stage B cell | 1.54e-08 | 2 |
small pre-B-II cell | 1.54e-08 | 2 |
immature B cell | 1.54e-08 | 2 |
regulatory T cell | 2.14e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.14e-08 | 2 |
naive regulatory T cell | 2.14e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.33e-16 | 15 |
haemolymphatic fluid | 1.33e-16 | 15 |
organism substance | 1.33e-16 | 15 |
thymus | 1.32e-08 | 4 |
hemolymphoid system gland | 1.32e-08 | 4 |
thymic region | 1.32e-08 | 4 |
pharyngeal gland | 1.32e-08 | 4 |
thymus primordium | 1.32e-08 | 4 |