FFCP PHASE1:Hg19::chr17:56494908..56494949,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54894 | |EntrezGene=54894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18505 | |HGNC=18505 | ||
|TSSclassifier=strong | |||
|UniProt=Q68DV7 | |UniProt=Q68DV7 | ||
|association_with_transcript=0bp_to_NM_017763,uc002iwg.3,uc002iwh.3,uc010dcw.2_5end | |association_with_transcript=0bp_to_NM_017763,uc002iwg.3,uc002iwh.3,uc010dcw.2_5end | ||
|cluster_id=chr17:56494908..56494949,- | |||
|coexpression_cluster_id=C2423 | |coexpression_cluster_id=C2423 | ||
|description=CAGE_peak_2_at_RNF43_5end | |description=CAGE_peak_2_at_RNF43_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.17e-19!254;CL:0000223!6.25e-19!59;CL:0002076!3.09e-15!43;CL:0002251!2.30e-09!21;CL:0002368!2.65e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.17e-19!254;CL:0000223!6.25e-19!59;CL:0002076!3.09e-15!43;CL:0002251!2.30e-09!21;CL:0002368!2.65e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.32e-13;42!CL:0002251;1.76e-10;20!CL:0002368;4.91e-09;13 | |ontology_enrichment_celltype_v019=CL:0002076;3.32e-13;42!CL:0002251;1.76e-10;20!CL:0002368;4.91e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000223,2.88e-19,58;CL:0000066,4.06e-18,253;CL:0002076,5.11e-17,42;CL:0002251,1.78e-10,20;CL:0002368,4.07e-09,13 | |||
|ontology_enrichment_development_v019=CL:0000223;2.08e-10;58!UBERON:0006595;4.67e-08;86 | |ontology_enrichment_development_v019=CL:0000223;2.08e-10;58!UBERON:0006595;4.67e-08;86 | ||
|ontology_enrichment_disease=DOID:305!1.12e-21!106;DOID:0050687!3.06e-14!143;DOID:1749!1.19e-08!14;DOID:162!6.82e-08!235;DOID:14566!3.92e-07!239 | |ontology_enrichment_disease=DOID:305!1.12e-21!106;DOID:0050687!3.06e-14!143;DOID:1749!1.19e-08!14;DOID:162!6.82e-08!235;DOID:14566!3.92e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.13e-10;14!DOID:305;6.11e-07;106 | |ontology_enrichment_disease_v019=DOID:1749;1.13e-10;14!DOID:305;6.11e-07;106 | ||
|ontology_enrichment_disease_v019_2=DOID:305,3.56e-18,106;DOID:1749,6.93e-11,14;DOID:0050687,2.17e-10,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.55e-23!169;UBERON:0000925!1.55e-23!169;UBERON:0006595!1.55e-23!169;UBERON:0007023!7.76e-22!115;UBERON:0001007!3.87e-20!155;UBERON:0001555!3.87e-20!155;UBERON:0007026!3.87e-20!155;UBERON:0004921!1.92e-19!129;UBERON:0004185!1.92e-19!129;UBERON:0000077!7.90e-17!130;UBERON:0001041!1.74e-14!98;UBERON:0001004!6.83e-14!72;UBERON:0000481!9.88e-14!347;UBERON:0005911!1.06e-12!82;UBERON:0000064!2.04e-12!219;UBERON:0000065!3.07e-11!53;UBERON:0000062!3.68e-11!511;UBERON:0000153!5.05e-11!129;UBERON:0007811!5.05e-11!129;UBERON:0001049!5.06e-11!57;UBERON:0005068!5.06e-11!57;UBERON:0006241!5.06e-11!57;UBERON:0007135!5.06e-11!57;UBERON:0000033!2.12e-10!123;UBERON:0002616!1.44e-09!59;UBERON:0008947!2.62e-09!38;UBERON:0003258!2.62e-09!38;UBERON:0000466!2.89e-09!126;UBERON:0000955!5.21e-09!69;UBERON:0006238!5.21e-09!69;UBERON:0001048!1.08e-08!168;UBERON:0005177!1.59e-08!107;UBERON:0000063!1.74e-08!97;UBERON:0002780!2.45e-08!41;UBERON:0001890!2.45e-08!41;UBERON:0006240!2.45e-08!41;UBERON:0004111!2.60e-08!241;UBERON:0000072!3.87e-08!46;UBERON:0002365!4.75e-08!31;UBERON:0002330!4.75e-08!31;UBERON:0001017!5.19e-08!82;UBERON:0004121!6.39e-08!169;UBERON:0003080!6.77e-08!42;UBERON:0002530!7.60e-08!59;UBERON:0000924!1.72e-07!173;UBERON:0006601!1.72e-07!173;UBERON:0005743!1.73e-07!86;UBERON:0000475!2.35e-07!365;UBERON:0005153!2.53e-07!37;UBERON:0000477!4.19e-07!286;UBERON:0003075!4.77e-07!86;UBERON:0007284!4.77e-07!86;UBERON:0001950!5.02e-07!20;UBERON:0003929!5.43e-07!54;UBERON:0005178!7.00e-07!34;UBERON:0002224!7.00e-07!34;UBERON:0009569!9.21e-07!113 | |ontology_enrichment_uberon=UBERON:0004119!1.55e-23!169;UBERON:0000925!1.55e-23!169;UBERON:0006595!1.55e-23!169;UBERON:0007023!7.76e-22!115;UBERON:0001007!3.87e-20!155;UBERON:0001555!3.87e-20!155;UBERON:0007026!3.87e-20!155;UBERON:0004921!1.92e-19!129;UBERON:0004185!1.92e-19!129;UBERON:0000077!7.90e-17!130;UBERON:0001041!1.74e-14!98;UBERON:0001004!6.83e-14!72;UBERON:0000481!9.88e-14!347;UBERON:0005911!1.06e-12!82;UBERON:0000064!2.04e-12!219;UBERON:0000065!3.07e-11!53;UBERON:0000062!3.68e-11!511;UBERON:0000153!5.05e-11!129;UBERON:0007811!5.05e-11!129;UBERON:0001049!5.06e-11!57;UBERON:0005068!5.06e-11!57;UBERON:0006241!5.06e-11!57;UBERON:0007135!5.06e-11!57;UBERON:0000033!2.12e-10!123;UBERON:0002616!1.44e-09!59;UBERON:0008947!2.62e-09!38;UBERON:0003258!2.62e-09!38;UBERON:0000466!2.89e-09!126;UBERON:0000955!5.21e-09!69;UBERON:0006238!5.21e-09!69;UBERON:0001048!1.08e-08!168;UBERON:0005177!1.59e-08!107;UBERON:0000063!1.74e-08!97;UBERON:0002780!2.45e-08!41;UBERON:0001890!2.45e-08!41;UBERON:0006240!2.45e-08!41;UBERON:0004111!2.60e-08!241;UBERON:0000072!3.87e-08!46;UBERON:0002365!4.75e-08!31;UBERON:0002330!4.75e-08!31;UBERON:0001017!5.19e-08!82;UBERON:0004121!6.39e-08!169;UBERON:0003080!6.77e-08!42;UBERON:0002530!7.60e-08!59;UBERON:0000924!1.72e-07!173;UBERON:0006601!1.72e-07!173;UBERON:0005743!1.73e-07!86;UBERON:0000475!2.35e-07!365;UBERON:0005153!2.53e-07!37;UBERON:0000477!4.19e-07!286;UBERON:0003075!4.77e-07!86;UBERON:0007284!4.77e-07!86;UBERON:0001950!5.02e-07!20;UBERON:0003929!5.43e-07!54;UBERON:0005178!7.00e-07!34;UBERON:0002224!7.00e-07!34;UBERON:0009569!9.21e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.13e-11;33!UBERON:0005409;5.30e-10;22!UBERON:0000065;3.16e-08;44!UBERON:0001555;6.85e-08;54!UBERON:0000160;1.25e-07;17!UBERON:0001004;6.36e-07;65!UBERON:0001950;9.10e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0004921;3.13e-11;33!UBERON:0005409;5.30e-10;22!UBERON:0000065;3.16e-08;44!UBERON:0001555;6.85e-08;54!UBERON:0000160;1.25e-07;17!UBERON:0001004;6.36e-07;65!UBERON:0001950;9.10e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.38e-22,160;UBERON:0000925,4.38e-22,160;UBERON:0006595,4.38e-22,160;UBERON:0001007,1.81e-19,145;UBERON:0001555,1.81e-19,145;UBERON:0007026,1.81e-19,145;UBERON:0004921,2.48e-19,118;UBERON:0011216,2.06e-17,223;UBERON:0001041,4.03e-14,87;UBERON:0001004,6.53e-14,74;UBERON:0007023,1.70e-12,114;UBERON:0000065,4.25e-11,54;UBERON:0005911,9.22e-11,82;UBERON:0008947,7.23e-09,38;UBERON:0003258,7.23e-09,38;UBERON:0005409,3.60e-08,25;UBERON:0001048,3.99e-08,160;UBERON:0000160,1.30e-07,17;UBERON:0000072,1.81e-07,47;UBERON:0005153,4.87e-07,37;UBERON:0005177,4.99e-07,101;UBERON:0001950,6.42e-07,20 | |||
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| ||
|short_description=p2@RNF43 | |short_description=p2@RNF43 | ||
}} | }} |
Latest revision as of 11:27, 16 September 2015
Short description: | p2@RNF43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF43_5end |
Coexpression cluster: | C2423_small_signet_papillotubular_malignant_hepatocellular_maxillary_colon |
Association with transcript: | 0bp_to_NM_017763, uc002iwg.3, uc002iwh.3, uc010dcw.2_5end |
EntrezGene: | RNF43 |
HGNC: | 18505 |
UniProt: | Q68DV7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 2.88e-19 | 58 |
epithelial cell | 4.06e-18 | 253 |
endo-epithelial cell | 5.11e-17 | 42 |
epithelial cell of alimentary canal | 1.78e-10 | 20 |
respiratory epithelial cell | 4.07e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.38e-22 | 160 |
endoderm | 4.38e-22 | 160 |
presumptive endoderm | 4.38e-22 | 160 |
digestive system | 1.81e-19 | 145 |
digestive tract | 1.81e-19 | 145 |
primitive gut | 1.81e-19 | 145 |
subdivision of digestive tract | 2.48e-19 | 118 |
organ system subdivision | 2.06e-17 | 223 |
foregut | 4.03e-14 | 87 |
respiratory system | 6.53e-14 | 74 |
adult organism | 1.70e-12 | 114 |
respiratory tract | 4.25e-11 | 54 |
endo-epithelium | 9.22e-11 | 82 |
respiratory primordium | 7.23e-09 | 38 |
endoderm of foregut | 7.23e-09 | 38 |
gastrointestinal system | 3.60e-08 | 25 |
primordium | 3.99e-08 | 160 |
intestine | 1.30e-07 | 17 |
segment of respiratory tract | 1.81e-07 | 47 |
epithelial bud | 4.87e-07 | 37 |
trunk region element | 4.99e-07 | 101 |
neocortex | 6.42e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.56e-18 | 106 |
squamous cell carcinoma | 6.93e-11 | 14 |
cell type cancer | 2.17e-10 | 143 |