FFCP PHASE1:Hg19::chr3:16555150..16555228,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23180 | |EntrezGene=23180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |HGNC=30278 | ||
|TSSclassifier=strong | |||
|UniProt=Q14699,Q8N5I0 | |UniProt=Q14699,Q8N5I0 | ||
|association_with_transcript=0bp_to_ENST00000334133,NM_015150,uc003cay.2_5end | |association_with_transcript=0bp_to_ENST00000334133,NM_015150,uc003cay.2_5end | ||
|cluster_id=chr3:16555150..16555228,- | |||
|description=CAGE_peak_1_at_RFTN1_5end | |description=CAGE_peak_1_at_RFTN1_5end | ||
|id=chr3:16555150..16555228,- | |id=chr3:16555150..16555228,- | ||
|ontology_enrichment_celltype=CL:0000048!1.09e-18!430;CL:0000723!6.46e-18!436;CL:0000034!1.63e-16!444;CL:0002320!2.26e-16!365;CL:0000838!1.18e-15!52;CL:0000542!5.89e-15!53;CL:0000051!5.89e-15!53;CL:0000134!7.23e-15!358;CL:0002371!9.10e-14!591;CL:0000144!1.66e-11!625;CL:0000219!1.38e-10!390;CL:0000057!3.44e-09!75;CL:0000738!7.99e-09!140;CL:0000945!3.41e-08!24;CL:0000826!3.41e-08!24;CL:0000791!1.32e-07!18;CL:0000789!1.32e-07!18;CL:0002420!1.32e-07!18;CL:0002419!1.32e-07!18;CL:0000790!1.32e-07!18;CL:0002087!1.91e-07!119;CL:0000084!3.61e-07!25;CL:0000827!3.61e-07!25;CL:0002031!6.73e-07!124 | |ontology_enrichment_celltype=CL:0000048!1.09e-18!430;CL:0000723!6.46e-18!436;CL:0000034!1.63e-16!444;CL:0002320!2.26e-16!365;CL:0000838!1.18e-15!52;CL:0000542!5.89e-15!53;CL:0000051!5.89e-15!53;CL:0000134!7.23e-15!358;CL:0002371!9.10e-14!591;CL:0000144!1.66e-11!625;CL:0000219!1.38e-10!390;CL:0000057!3.44e-09!75;CL:0000738!7.99e-09!140;CL:0000945!3.41e-08!24;CL:0000826!3.41e-08!24;CL:0000791!1.32e-07!18;CL:0000789!1.32e-07!18;CL:0002420!1.32e-07!18;CL:0002419!1.32e-07!18;CL:0000790!1.32e-07!18;CL:0002087!1.91e-07!119;CL:0000084!3.61e-07!25;CL:0000827!3.61e-07!25;CL:0002031!6.73e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.20e-09;53!CL:0000945;3.34e-08;24!CL:0000791;1.20e-07;18!CL:0000789;1.20e-07;18!CL:0002419;1.20e-07;18!CL:0000084;3.55e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,8.66e-20,427;CL:0000723,5.59e-19,433;CL:0000034,1.81e-17,441;CL:0002320,2.33e-17,361;CL:0000134,8.29e-16,354;CL:0000838,1.15e-15,52;CL:0000542,5.74e-15,53;CL:0000051,5.74e-15,53;CL:0000219,2.73e-11,386;CL:0000738,8.23e-10,136;CL:0000057,1.27e-09,76;CL:0002087,2.16e-08,115;CL:0000945,3.37e-08,24;CL:0000826,3.37e-08,24;CL:0002031,1.01e-07,120;CL:0000791,1.30e-07,18;CL:0000789,1.30e-07,18;CL:0002420,1.30e-07,18;CL:0002419,1.30e-07,18;CL:0000790,1.30e-07,18;CL:0000084,3.57e-07,25;CL:0000827,3.57e-07,25;CL:0000988,6.37e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.20e-09;53!CL:0000790;1.20e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.67e-15!375;UBERON:0001009!2.54e-10!113;UBERON:0004535!5.80e-10!110;UBERON:0003081!6.89e-08!216;UBERON:0002049!3.01e-07!79;UBERON:0007798!3.01e-07!79;UBERON:0000055!5.36e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.01e-16,371;UBERON:0001009,6.13e-10,112;UBERON:0004535,1.39e-09,109;UBERON:0003081,4.56e-08,203;UBERON:0002049,6.92e-07,78;UBERON:0007798,6.92e-07,78 | |||
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| ||
|short_description=p1@RFTN1 | |short_description=p1@RFTN1 | ||
}} | }} |
Latest revision as of 13:12, 16 September 2015
Short description: | p1@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RFTN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000334133, NM_015150, uc003cay.2_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | Q14699Q8N5I0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 8.66e-20 | 427 |
somatic stem cell | 5.59e-19 | 433 |
stem cell | 1.81e-17 | 441 |
connective tissue cell | 2.33e-17 | 361 |
mesenchymal cell | 8.29e-16 | 354 |
lymphoid lineage restricted progenitor cell | 1.15e-15 | 52 |
lymphocyte | 5.74e-15 | 53 |
common lymphoid progenitor | 5.74e-15 | 53 |
motile cell | 2.73e-11 | 386 |
leukocyte | 8.23e-10 | 136 |
fibroblast | 1.27e-09 | 76 |
nongranular leukocyte | 2.16e-08 | 115 |
lymphocyte of B lineage | 3.37e-08 | 24 |
pro-B cell | 3.37e-08 | 24 |
hematopoietic lineage restricted progenitor cell | 1.01e-07 | 120 |
mature alpha-beta T cell | 1.30e-07 | 18 |
alpha-beta T cell | 1.30e-07 | 18 |
immature T cell | 1.30e-07 | 18 |
mature T cell | 1.30e-07 | 18 |
immature alpha-beta T cell | 1.30e-07 | 18 |
T cell | 3.57e-07 | 25 |
pro-T cell | 3.57e-07 | 25 |
hematopoietic cell | 6.37e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.01e-16 | 371 |
circulatory system | 6.13e-10 | 112 |
cardiovascular system | 1.39e-09 | 109 |
lateral plate mesoderm | 4.56e-08 | 203 |
vasculature | 6.92e-07 | 78 |
vascular system | 6.92e-07 | 78 |