FFCP PHASE1:Hg19::chr3:16555150..16555228,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23180 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |||
|TSSclassifier=strong | |||
|UniProt=Q14699,Q8N5I0 | |||
|association_with_transcript=0bp_to_ENST00000334133,NM_015150,uc003cay.2_5end | |||
|cluster_id=chr3:16555150..16555228,- | |||
|description=CAGE_peak_1_at_RFTN1_5end | |||
|id=chr3:16555150..16555228,- | |||
|ontology_enrichment_celltype=CL:0000048!1.09e-18!430;CL:0000723!6.46e-18!436;CL:0000034!1.63e-16!444;CL:0002320!2.26e-16!365;CL:0000838!1.18e-15!52;CL:0000542!5.89e-15!53;CL:0000051!5.89e-15!53;CL:0000134!7.23e-15!358;CL:0002371!9.10e-14!591;CL:0000144!1.66e-11!625;CL:0000219!1.38e-10!390;CL:0000057!3.44e-09!75;CL:0000738!7.99e-09!140;CL:0000945!3.41e-08!24;CL:0000826!3.41e-08!24;CL:0000791!1.32e-07!18;CL:0000789!1.32e-07!18;CL:0002420!1.32e-07!18;CL:0002419!1.32e-07!18;CL:0000790!1.32e-07!18;CL:0002087!1.91e-07!119;CL:0000084!3.61e-07!25;CL:0000827!3.61e-07!25;CL:0002031!6.73e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.20e-09;53!CL:0000945;3.34e-08;24!CL:0000791;1.20e-07;18!CL:0000789;1.20e-07;18!CL:0002419;1.20e-07;18!CL:0000084;3.55e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,8.66e-20,427;CL:0000723,5.59e-19,433;CL:0000034,1.81e-17,441;CL:0002320,2.33e-17,361;CL:0000134,8.29e-16,354;CL:0000838,1.15e-15,52;CL:0000542,5.74e-15,53;CL:0000051,5.74e-15,53;CL:0000219,2.73e-11,386;CL:0000738,8.23e-10,136;CL:0000057,1.27e-09,76;CL:0002087,2.16e-08,115;CL:0000945,3.37e-08,24;CL:0000826,3.37e-08,24;CL:0002031,1.01e-07,120;CL:0000791,1.30e-07,18;CL:0000789,1.30e-07,18;CL:0002420,1.30e-07,18;CL:0002419,1.30e-07,18;CL:0000790,1.30e-07,18;CL:0000084,3.57e-07,25;CL:0000827,3.57e-07,25;CL:0000988,6.37e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;1.20e-09;53!CL:0000790;1.20e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.67e-15!375;UBERON:0001009!2.54e-10!113;UBERON:0004535!5.80e-10!110;UBERON:0003081!6.89e-08!216;UBERON:0002049!3.01e-07!79;UBERON:0007798!3.01e-07!79;UBERON:0000055!5.36e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.01e-16,371;UBERON:0001009,6.13e-10,112;UBERON:0004535,1.39e-09,109;UBERON:0003081,4.56e-08,203;UBERON:0002049,6.92e-07,78;UBERON:0007798,6.92e-07,78 | |||
|phase1_expression=35.0639271992174,41.1073005870688,23.5393854840272,35.0256544235956,42.4613039705923,31.4041868676133,22.796989035148,10.7392378482561,26.3797484481837,18.9215131106162,20.2362338712004,19.004399375325,18.7274554542202,17.8223548262467,28.5001743126008,16.8081286612944,10.2458069764076,15.3365118981348,20.0052447504108,29.3028118222755,31.416106451615,30.0916532618964,18.8915751506497,17.3830519842563,23.9786441626073,51.8847025028589,37.5199693786252,44.7077237861698,25.9620422720277,23.0297638858328,21.3646250176185,7.35536979583142,17.7711492079168,9.61360426433648,55.2341140137551,29.2868618924088,15.2672228454121,23.2678071583389,33.4909227275137,30.815543641651,11.1957737119962,9.06902264853143,10.5605982730016,6.10672602874172,7.55751887377619,10.1885305698883,8.36744532860465,8.22335776043652,6.19412741790207,9.78154133895312,8.45330331546032,8.27687804610048,13.7898272294647,14.846147722428,14.8969135253776,10.5415710143859,9.27880910196676,5.61808711112712,15.3041946185451,9.9487998393589,9.59005688698562,11.2149442063483,14.1619196911359,14.9178662686443,19.7342282267437,22.6954089876456,36.7465126907389,7.78870862295904,7.30076085788282,3.69221035998698,18.7673845816344,10.3117738076518,10.1267963981083,20.9142733448822,18.9217826968889,13.8374706035528,11.2328631146495,6.90813707070929,9.00063285503649,23.0860322430411,20.4884177515063,23.5636758356378,31.6793240030381,31.1299008419415,21.3482220927253,20.0563204606258,18.8186113906926,29.8871268776331,35.0353782575977,38.1621501814146,99.043056625044,73.9918858607383,75.3078259406701,15.8605594294831,29.1464452750399,13.9593564930791,32.0636925285548,31.047850257184,39.8866908059048,19.0592604745373,34.221837996527,25.0927337039409,31.1722765452658,17.6028521878574,28.871378932534,27.470202928369,33.5796791068619,27.4115424212945,23.9309199510176,32.5587051115279,26.5296017074414,20.8658221729238,29.50902606925,26.7540828089713,26.1338809512442,19.8291349720741,25.2925525777268,23.3666662928188,19.2294965934822,25.4852331459277,28.6476719696824,28.5135613334512,24.0920190524436,23.6775230635674,21.2382235138988,30.5442655136782,25.4549679045524,38.3052812126992,40.1160293675261,48.0817020890893,24.3806866313962,11.4019146149618,18.0286212199378,14.4575660953827,36.096329565784,15.2088844908865,26.2444362526863,10.2193322763554,4.53767122387526,8.42571710357743,9.48615685485761,13.0324180120224,14.9361068199942,7.04490441290416,23.6919597367919,24.3781632218974,42.0147155239614,57.9532217061981,46.3315877731904,60.5475727167191,13.3170812935692,17.2046919021225,15.9684630739493,22.6123176769604,22.6529695553349,18.1577907680445,19.2275369213866,16.7970893460064,22.7690408119495,26.1082077956443,9.26507429351038,19.7670747486813,9.76248230192678,17.6478278566017,28.3549681758616,16.3418502759866,19.9831141637291,24.098856823431,18.397996495906,8.54339093611316,15.0225430022934,1.31780417436063,11.6334079244498,12.6467275121335,15.9031024542502,19.6277293080099,9.40105183773854,16.0628507619336,20.2160977853064,20.1843936051231,29.8897188043174,27.1334303258876,15.5605517699883,22.2272608914985,18.3077331487074,33.7527063648197,31.1134999219199,22.4948574560445,12.7985631500431,14.8322673601557,19.2788797911823,14.6793123304706,14.2448191043956,16.2922935774608,26.5400422631361,23.0928516546124,47.8398366843794,39.2040942903078,31.6501669476553,34.586131753645,55.3335969198504,17.1702836233148,25.3990595340087,18.2862316219561,18.876037697876,26.6644382345147,34.7049916074239,18.1491493056034,18.6565221116416,18.1523780495782,18.0142115985628,15.6047369963889,14.9426167395736,24.4758513043348,23.0784901851171,18.0590675498155,27.3797984502968,16.4081953258674,15.0041334786948,26.8332454319228,21.6555851435135,13.7022853589591,13.564847384839,14.301303134084,13.9100521501326,16.3478619371732,1.34171076742555,0.530119073285941,0.69716365721711,1.45125477021519,1.26160425437814,0.72995471815166,43.8058690523485,61.1078891283241,52.4912701139426,43.1862173069741,46.9221663085231,3.54920400119532,3.37169380156203,2.89213235860178,4.08087699109858,4.13970943775572,3.32178866755535,2.83145747136345,3.72820783738158,2.69323009862473,47.2419490959775,30.8531902367581,40.3342531104772,41.1624391879517,8.87285243752816,8.84544495009863,11.8157981336281,15.0097453800981,3.56666471775029,11.8381789105983,12.5115325365833,20.2323155863715,15.783048668626,11.5735556448162,12.7065239071027,19.758760920312,18.7630744632855,2.31860809950154,26.2995475088241,14.0035454328242,10.1856812766854,11.2249949818413,1.58040879591855,0,12.8032843165447,29.0165288772655,26.1590845628162,8.43604505880993,11.926731102119,10.3495820986942,1.97028749946266,3.19697332365358,4.60059214998253,26.111151608485,13.9116525740897,21.7694521317811,16.7179145963675,18.5576377136779,1.07946420296687,2.29193055334967,2.34434894420094,11.9750712215894,7.60923446004594,0.901029173531752,3.14409075893636,23.323265543835,42.7240867456615,12.3941703037406,12.2808129969889,17.8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| |||
|short_description=p1@RFTN1 | |||
}} |
Latest revision as of 13:12, 16 September 2015
Short description: | p1@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RFTN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000334133, NM_015150, uc003cay.2_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | Q14699Q8N5I0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 8.66e-20 | 427 |
somatic stem cell | 5.59e-19 | 433 |
stem cell | 1.81e-17 | 441 |
connective tissue cell | 2.33e-17 | 361 |
mesenchymal cell | 8.29e-16 | 354 |
lymphoid lineage restricted progenitor cell | 1.15e-15 | 52 |
lymphocyte | 5.74e-15 | 53 |
common lymphoid progenitor | 5.74e-15 | 53 |
motile cell | 2.73e-11 | 386 |
leukocyte | 8.23e-10 | 136 |
fibroblast | 1.27e-09 | 76 |
nongranular leukocyte | 2.16e-08 | 115 |
lymphocyte of B lineage | 3.37e-08 | 24 |
pro-B cell | 3.37e-08 | 24 |
hematopoietic lineage restricted progenitor cell | 1.01e-07 | 120 |
mature alpha-beta T cell | 1.30e-07 | 18 |
alpha-beta T cell | 1.30e-07 | 18 |
immature T cell | 1.30e-07 | 18 |
mature T cell | 1.30e-07 | 18 |
immature alpha-beta T cell | 1.30e-07 | 18 |
T cell | 3.57e-07 | 25 |
pro-T cell | 3.57e-07 | 25 |
hematopoietic cell | 6.37e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.01e-16 | 371 |
circulatory system | 6.13e-10 | 112 |
cardiovascular system | 1.39e-09 | 109 |
lateral plate mesoderm | 4.56e-08 | 203 |
vasculature | 6.92e-07 | 78 |
vascular system | 6.92e-07 | 78 |