FFCP PHASE1:Hg19::chr4:16900320..16900332,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9079 | |EntrezGene=9079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |HGNC=6533 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000510825_5end | |association_with_transcript=-19bp_to_ENST00000510825_5end | ||
|cluster_id=chr4:16900320..16900332,- | |||
|coexpression_cluster_id=C1083 | |||
|description=CAGE_peak_8_at_LDB2_5end | |description=CAGE_peak_8_at_LDB2_5end | ||
|id=chr4:16900320..16900332,- | |id=chr4:16900320..16900332,- | ||
|ontology_enrichment_celltype=CL:0002139!1.96e-09!24;CL:0000115!1.44e-08!35;CL:0000057!1.78e-08!75;CL:0002620!8.46e-07!23 | |ontology_enrichment_celltype=CL:0002139!1.96e-09!24;CL:0000115!1.44e-08!35;CL:0000057!1.78e-08!75;CL:0002620!8.46e-07!23 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-20!115;UBERON:0001869!5.86e-14!32;UBERON:0001893!5.87e-14!34;UBERON:0000956!1.93e-13!25;UBERON:0000203!1.93e-13!25;UBERON:0002619!2.28e-13!22;UBERON:0002791!3.40e-13!33;UBERON:0002020!3.59e-13!34;UBERON:0003528!3.59e-13!34;UBERON:0003080!3.80e-13!42;UBERON:0001017!5.02e-13!82;UBERON:0005743!8.90e-13!86;UBERON:0001950!1.04e-12!20;UBERON:0002780!1.15e-12!41;UBERON:0001890!1.15e-12!41;UBERON:0006240!1.15e-12!41;UBERON:0001049!1.51e-12!57;UBERON:0005068!1.51e-12!57;UBERON:0006241!1.51e-12!57;UBERON:0007135!1.51e-12!57;UBERON:0002346!5.54e-12!90;UBERON:0000073!2.87e-11!94;UBERON:0001016!2.87e-11!94;UBERON:0000955!3.42e-11!69;UBERON:0006238!3.42e-11!69;UBERON:0000477!1.16e-10!286;UBERON:0002616!2.09e-10!59;UBERON:0003075!4.97e-10!86;UBERON:0007284!4.97e-10!86;UBERON:0004111!7.28e-10!241;UBERON:0003056!3.83e-09!61;UBERON:0000025!1.42e-08!194;UBERON:0000153!1.57e-08!129;UBERON:0007811!1.57e-08!129;UBERON:0000033!2.31e-08!123;UBERON:0000468!2.67e-07!659;UBERON:0000119!4.41e-07!312;UBERON:0000924!4.55e-07!173;UBERON:0006601!4.55e-07!173;UBERON:0000483!7.87e-07!309 | |ontology_enrichment_uberon=UBERON:0007023!1.40e-20!115;UBERON:0001869!5.86e-14!32;UBERON:0001893!5.87e-14!34;UBERON:0000956!1.93e-13!25;UBERON:0000203!1.93e-13!25;UBERON:0002619!2.28e-13!22;UBERON:0002791!3.40e-13!33;UBERON:0002020!3.59e-13!34;UBERON:0003528!3.59e-13!34;UBERON:0003080!3.80e-13!42;UBERON:0001017!5.02e-13!82;UBERON:0005743!8.90e-13!86;UBERON:0001950!1.04e-12!20;UBERON:0002780!1.15e-12!41;UBERON:0001890!1.15e-12!41;UBERON:0006240!1.15e-12!41;UBERON:0001049!1.51e-12!57;UBERON:0005068!1.51e-12!57;UBERON:0006241!1.51e-12!57;UBERON:0007135!1.51e-12!57;UBERON:0002346!5.54e-12!90;UBERON:0000073!2.87e-11!94;UBERON:0001016!2.87e-11!94;UBERON:0000955!3.42e-11!69;UBERON:0006238!3.42e-11!69;UBERON:0000477!1.16e-10!286;UBERON:0002616!2.09e-10!59;UBERON:0003075!4.97e-10!86;UBERON:0007284!4.97e-10!86;UBERON:0004111!7.28e-10!241;UBERON:0003056!3.83e-09!61;UBERON:0000025!1.42e-08!194;UBERON:0000153!1.57e-08!129;UBERON:0007811!1.57e-08!129;UBERON:0000033!2.31e-08!123;UBERON:0000468!2.67e-07!659;UBERON:0000119!4.41e-07!312;UBERON:0000924!4.55e-07!173;UBERON:0006601!4.55e-07!173;UBERON:0000483!7.87e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.07e-16;20!UBERON:0002619;1.58e-16;22!UBERON:0000956;5.87e-14;25!UBERON:0000203;5.87e-14;25!UBERON:0001869;5.33e-13;32!UBERON:0001893;1.20e-11;34!UBERON:0002791;1.44e-11;32!UBERON:0000922;4.02e-11;49!UBERON:0003528;1.85e-10;34!UBERON:0002020;1.85e-10;34!UBERON:0000200;1.93e-08;6!UBERON:0002050;2.83e-08;5!UBERON:0005423;2.83e-08;5!UBERON:0002780;1.43e-07;41!UBERON:0001890;1.43e-07;41!UBERON:0002346;6.66e-07;4!UBERON:0000923;6.66e-07;4!UBERON:0010316;6.66e-07;4!UBERON:0005291;6.66e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.75e-17,20;UBERON:0002619,9.59e-17,22;UBERON:0001869,1.72e-14,32;UBERON:0000956,3.81e-14,25;UBERON:0000203,3.81e-14,25;UBERON:0001893,2.79e-13,34;UBERON:0002791,9.66e-13,32;UBERON:0003528,1.16e-11,34;UBERON:0002020,1.16e-11,34;UBERON:0002780,5.87e-11,41;UBERON:0001890,5.87e-11,41;UBERON:0003080,5.87e-11,41;UBERON:0006240,5.87e-11,41;UBERON:0007023,9.85e-11,114;UBERON:0000200,7.22e-09,6;UBERON:0001017,3.22e-08,81;UBERON:0001049,2.62e-07,56;UBERON:0005068,2.62e-07,56;UBERON:0006241,2.62e-07,56;UBERON:0007135,2.62e-07,56;UBERON:0000073,3.76e-07,53;UBERON:0002616,3.76e-07,53 | |||
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| ||
|short_description=p8@LDB2 | |short_description=p8@LDB2 | ||
}} | }} |
Latest revision as of 15:39, 16 September 2015
Short description: | p8@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LDB2_5end |
Coexpression cluster: | C1083_lung_uterus_Endothelial_neuroectodermal_spleen_mesenchymal_occipital |
Association with transcript: | -19bp_to_ENST00000510825_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 7.75e-17 | 20 |
regional part of cerebral cortex | 9.59e-17 | 22 |
cerebral hemisphere | 1.72e-14 | 32 |
cerebral cortex | 3.81e-14 | 25 |
pallium | 3.81e-14 | 25 |
telencephalon | 2.79e-13 | 34 |
regional part of telencephalon | 9.66e-13 | 32 |
brain grey matter | 1.16e-11 | 34 |
gray matter | 1.16e-11 | 34 |
regional part of forebrain | 5.87e-11 | 41 |
forebrain | 5.87e-11 | 41 |
anterior neural tube | 5.87e-11 | 41 |
future forebrain | 5.87e-11 | 41 |
adult organism | 9.85e-11 | 114 |
gyrus | 7.22e-09 | 6 |
central nervous system | 3.22e-08 | 81 |
neural tube | 2.62e-07 | 56 |
neural rod | 2.62e-07 | 56 |
future spinal cord | 2.62e-07 | 56 |
neural keel | 2.62e-07 | 56 |
regional part of nervous system | 3.76e-07 | 53 |
regional part of brain | 3.76e-07 | 53 |