FFCP PHASE2:Hg19::chr4:17513702..17513720,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:5860 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9752 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9752 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B3KW71,D6RGG7,B7Z415 | ||
|association_with_transcript=0bp_to_ENST00000428702,ENST00000508623,ENST00000513615_5end | |association_with_transcript=0bp_to_ENST00000428702,ENST00000508623,ENST00000513615_5end | ||
|cluster_id=chr4:17513702..17513720,- | |cluster_id=chr4:17513702..17513720,- | ||
Latest revision as of 20:04, 16 September 2015
| Short description: | p1@QDPR |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_QDPR_5end |
| Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
| Association with transcript: | 0bp_to_ENST00000428702, ENST00000508623, ENST00000513615_5end |
| EntrezGene: | QDPR |
| HGNC: | 9752 |
| UniProt: | B3KW71D6RGG7B7Z415 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@QDPR |
|---|
0
100
200
300
400
500
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 1.66e-09 | 250 |
| muscle precursor cell | 1.57e-07 | 58 |
| myoblast | 1.57e-07 | 58 |
| multi-potent skeletal muscle stem cell | 1.57e-07 | 58 |
| muscle cell | 2.55e-07 | 55 |
| electrically responsive cell | 2.77e-07 | 61 |
| electrically active cell | 2.77e-07 | 61 |
| ectodermal cell | 7.46e-07 | 72 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| epithelium | 2.95e-35 | 306 |
| cell layer | 3.30e-35 | 309 |
| structure with developmental contribution from neural crest | 6.59e-28 | 132 |
| tube | 1.14e-27 | 192 |
| neural tube | 6.62e-26 | 56 |
| neural rod | 6.62e-26 | 56 |
| future spinal cord | 6.62e-26 | 56 |
| neural keel | 6.62e-26 | 56 |
| ecto-epithelium | 1.38e-25 | 104 |
| neural plate | 3.20e-24 | 82 |
Showing 1 to 10 of 81 entries
