FFCP PHASE1:Hg19::chr4:177713451..177713493,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:177713451..177713493,- to FFCP PHASE1:Hg19::chr4:177713451..177713493,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7424 | |EntrezGene=7424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |HGNC=12682 | ||
|TSSclassifier=strong | |||
|UniProt=P49767 | |UniProt=P49767 | ||
|association_with_transcript=387bp_to_ENST00000280193_5end | |||
|cluster_id=chr4:177713451..177713493,- | |||
|description=CAGE_peak_7_at_VEGFC_5end | |||
|id=chr4:177713451..177713493,- | |||
|ontology_enrichment_celltype=CL:0000055!2.64e-31!180;CL:0000057!4.31e-20!75;CL:0000680!1.22e-12!57;CL:0000056!1.22e-12!57;CL:0000355!1.22e-12!57;CL:0000183!1.02e-11!59;CL:0000192!2.61e-11!42;CL:0000514!2.61e-11!42;CL:0000187!4.31e-11!54;CL:0000359!1.23e-10!32;CL:0002620!1.26e-10!23;CL:0000222!2.09e-09!119;CL:0000393!1.34e-08!60;CL:0000211!1.34e-08!60;CL:0000220!6.63e-07!246;CL:0002334!8.96e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.70e-13;23!CL:0000359;1.48e-10;32!CL:0000057;1.08e-08;73!CL:0000192;1.22e-07;43!CL:0002320;3.54e-07;188!CL:0002334;4.59e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.59e-20,76;CL:0002620,7.84e-14,23;CL:0000359,1.12e-11,32;CL:0000680,1.40e-10,58;CL:0000056,1.40e-10,58;CL:0000355,1.40e-10,58;CL:0000192,9.86e-10,43;CL:0000514,9.86e-10,43;CL:0000187,9.82e-09,55;CL:0000048,1.52e-07,427;CL:0002334,2.07e-07,12;CL:0000723,2.51e-07,433;CL:0000062,2.84e-07,11;CL:0000375,2.84e-07,11;CL:0000335,2.84e-07,11;CL:0000393,4.83e-07,61;CL:0000211,4.83e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;1.22e-07;43!CL:0000335;2.61e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.80e-18!83;UBERON:0002329!9.80e-18!83;UBERON:0003077!9.80e-18!83;UBERON:0003059!9.80e-18!83;UBERON:0007282!9.80e-18!83;UBERON:0009618!9.80e-18!83;UBERON:0007285!9.80e-18!83;UBERON:0000486!6.25e-16!82;UBERON:0004290!6.31e-15!70;UBERON:0000475!2.63e-14!365;UBERON:0002100!4.30e-14!216;UBERON:0005256!2.40e-13!143;UBERON:0001134!4.44e-13!61;UBERON:0002036!4.44e-13!61;UBERON:0003082!4.44e-13!61;UBERON:0002385!5.65e-13!63;UBERON:0001015!5.65e-13!63;UBERON:0000383!5.65e-13!63;UBERON:0001637!6.34e-12!42;UBERON:0003509!6.34e-12!42;UBERON:0004572!6.34e-12!42;UBERON:0003102!5.48e-11!95;UBERON:0000055!3.67e-10!69;UBERON:0003104!4.70e-10!238;UBERON:0009142!4.70e-10!238;UBERON:0001981!4.75e-10!60;UBERON:0007500!4.75e-10!60;UBERON:0004537!4.75e-10!60;UBERON:0006965!4.75e-10!60;UBERON:0002049!5.37e-10!79;UBERON:0007798!5.37e-10!79;UBERON:0000490!5.41e-10!138;UBERON:0000481!7.21e-10!347;UBERON:0004573!1.12e-09!33;UBERON:0004571!1.12e-09!33;UBERON:0004872!1.57e-09!84;UBERON:0000468!2.63e-09!659;UBERON:0000483!1.17e-07!309;UBERON:0000119!1.24e-07!312;UBERON:0000467!1.59e-07!625;UBERON:0000480!2.22e-07!626;UBERON:0002097!3.77e-07!40;UBERON:0002199!3.80e-07!45;UBERON:0002416!3.80e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.26e-09;33!UBERON:0004571;5.26e-09;33!UBERON:0001637;2.63e-08;42!UBERON:0003509;2.63e-08;42!UBERON:0004572;2.63e-08;42!UBERON:0004765;4.54e-08;26!UBERON:0002097;1.82e-07;41!UBERON:0001434;2.84e-07;36!UBERON:0002384;9.38e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,6.71e-13,71;UBERON:0003059,6.71e-13,71;UBERON:0007282,6.71e-13,71;UBERON:0004290,6.71e-13,71;UBERON:0009618,6.71e-13,71;UBERON:0007524,7.50e-13,73;UBERON:0007503,1.00e-12,78;UBERON:0003077,1.53e-12,72;UBERON:0007285,1.53e-12,72;UBERON:0001637,4.11e-12,42;UBERON:0003509,4.11e-12,42;UBERON:0004572,4.11e-12,42;UBERON:0000486,7.36e-12,83;UBERON:0001134,3.79e-11,62;UBERON:0002036,3.79e-11,62;UBERON:0003082,3.79e-11,62;UBERON:0004573,1.36e-10,33;UBERON:0004571,1.36e-10,33;UBERON:0002385,1.85e-10,64;UBERON:0001015,1.85e-10,64;UBERON:0000383,1.85e-10,64;UBERON:0002199,1.07e-09,46;UBERON:0002416,1.07e-09,46;UBERON:0002097,1.10e-09,41;UBERON:0005256,1.28e-09,122;UBERON:0000490,2.98e-09,148;UBERON:0003102,3.06e-09,99;UBERON:0007500,6.15e-09,59;UBERON:0001981,6.15e-09,59;UBERON:0004537,6.15e-09,59;UBERON:0006965,6.15e-09,59;UBERON:0003104,9.64e-09,160;UBERON:0009142,9.64e-09,160;UBERON:0002100,3.52e-08,199;UBERON:0000055,6.72e-08,68 | |||
|phase1_expression=2.18014055124668,4.28201047781966,2.39622486963151,0,0.893922188854576,3.48935409640147,0,0,0.522371256399677,1.22866968250754,0,0,0,3.34169152992126,1.98838425436749,0,0.602694528023977,2.19093027116212,1.46379839637152,0.246242116153576,1.22400414746552,0.626909442956176,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0,0,2.10844143144775,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53007406669196,2.50668955317945,1.01392563272577,2.3858578411533,0.486634870302636,0.283604451492204,0.886917589850256,1.14185221401064,0.196468613246569,0,0,0,0,0,0,0,0,0.39752481473341,0,0,1.13061588384802,0.419499436209906,0.550236083880135,1.67195973229448,0,0.71153252537342,0.33472061276467,0,0,0,0.367663080345869,0.81014194788176,0.357198913136319,0,0.900891843866578,3.06633274931766,0,0.183201743930407,0,0,0.436094052142534,2.48485975847659,1.2663051166458,5.95841313659485,3.44203944898576,2.12801029319014,1.68203280042692,1.06748995729705,0.74000264525148,0,0.808264032418128,0.163461903113459,0.151357427644931,0,0.234321431833797,0.312160076830321,3.4228309292667,1.19558944441441,2.46612447151906,1.45685649931318,0.98315564691574,0.408308342509787,0.491337269247072,0.309977343527296,4.75201142912821,2.47266929278557,1.82032272387605,2.15585442544872,1.68336113954066,0.875829639103749,1.38532057742091,1.75591048352335,0.919463387397059,1.35214253015937,1.24775401476023,5.38168907066586,1.49490172172997,1.69545520927649,3.60109315301283,2.67936576019941,3.34932702059318,2.23340227597908,4.21940830603166,2.14361411354637,2.77677151668526,2.48534726334208,1.77810662500693,2.4850671476163,2.61955455391865,1.52604533079439,0.386521706326594,1.90922284413584,0.860413786167011,0,0,0,0.10366105501537,0,0,0,1.28648187638577,1.38134921352481,0,0.721879481669586,0,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,1.47008711385542,0,0,1.18157981336281,0,0,0.171567810298526,0,0,1.40740561376283,0.833296006426766,0.325808305310325,1.03993478527958,0,0.231860809950154,0.587043471179108,0.433099343283221,0.462985512576611,0.380508304469197,0,0,0,0,0,0,2.51973192298289,1.84307626415102,0.806026704325635,0.581267877027924,0.766765358330422,3.4486426652716,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0.336393253036082,0,0.5867062865676,4.39523833576444,0,0.845302752556,1.86156681609409,2.08014873822732,0.514414748524284,0,1.3321108950805,1.28680194292333,0.542621605391443,0,0.325736184293735,2.84313558994037,1.58390374586686,0.602878754119172,0.871533458600294,0.899756920638513,0,0,0,0.718874566474748,0,5.70547620162874,2.46128221334885,3.08214483825575,4.1184021545176,0,0,0,0,0,0,0,0,0,0,0,0,2.08575535922538,1.00034104211935,1.89885516589815,0.623912584592421,1.42743191037729,1.10391690523754,1.17141414992713,3.00946099727719,6.82222512167955,0,4.64957918974806,3.87175253937577,1.65078867489357,0.391602314925481,0.686286847621712,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,1.48864684691266,5.37116906508219,1.96462066103151,1.66580894032411,0.511707249066704,2.41280881715411,2.96836132889982,2.31314540703983,2.66342587969691,0.98552587216571,2.07701771673448,2.32420756919918,0,2.80709058424599,0.0920809889358963,1.37777337797528,1.63882051206045,0.786746489756545,0,0.616122696835318,0.784349769176855,0,0.316654886678627,0,0.340187410553031,1.94324324491925,0,1.35473218771926,1.00337954770971,0,0,0.223874754722178,0,0,0,1.31205858279882,0.650756789328606,0.618246069886334,1.19040304263846,1.48517099857058,1.14853107599234,0.650060246036521,1.6068392984416,2.03008508413456,0.616194468458578,0.15350367472613,0.964856007391714,0.537101224341368,0.145016693914229,1.10794615640931,1.15741646340759,0.991709492165869,1.53752053892085,3.1903178123646,0.10115778085555,1.85938219718914,2.51849877464512,2.7881490806424,0.616067160352178,2.12922412126809,1.73986598415015,0.18532421910392,1.43124886741991,0,0.632758849437452,1.33441135746677,1.27948895655667,0.42793898803392,2.22742273548156,3.13979456079692,1.07923474549989,0.54907405947211,0.942499218765491,1.41527737101321,1.58510321173008,1.68503382495592,0.48763373908959,2.43713489631284,4.22600587027022,1.09199929126389,0.565621727814851,4.52032466480971,3.30819206127675,1.99031692572366,3.5076070820301,0.578775534266688,0,1.42037263873893,1.54911749049875,0.563391205064483,0.717056761020258,1.27723753317057,1.07001315444375,1.41904425628239,0.633322905892992,1.31717957183961,0,0.349934720244983,1.92444225451024,1.34060455107157,1.08890984861323,0.659006605437454,0.86101074534246,0,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0,0,0,0,0,0.140669416410513,1.11308705022906,0,0,0.19924798825107,0.276283915531148,0,0,0,1.866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| ||
|short_description=p7@VEGFC | |||
}} | }} |
Latest revision as of 22:34, 16 September 2015
Short description: | p7@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VEGFC_5end |
Coexpression cluster: | NA |
Association with transcript: | 387bp_to_ENST00000280193_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.59e-20 | 76 |
skin fibroblast | 7.84e-14 | 23 |
vascular associated smooth muscle cell | 1.12e-11 | 32 |
muscle precursor cell | 1.40e-10 | 58 |
myoblast | 1.40e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.40e-10 | 58 |
smooth muscle cell | 9.86e-10 | 43 |
smooth muscle myoblast | 9.86e-10 | 43 |
muscle cell | 9.82e-09 | 55 |
multi fate stem cell | 1.52e-07 | 427 |
preadipocyte | 2.07e-07 | 12 |
somatic stem cell | 2.51e-07 | 433 |
osteoblast | 2.84e-07 | 11 |
osteoprogenitor cell | 2.84e-07 | 11 |
mesenchyme condensation cell | 2.84e-07 | 11 |
electrically responsive cell | 4.83e-07 | 61 |
electrically active cell | 4.83e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
somite | 6.71e-13 | 71 |
presomitic mesoderm | 6.71e-13 | 71 |
presumptive segmental plate | 6.71e-13 | 71 |
dermomyotome | 6.71e-13 | 71 |
trunk paraxial mesoderm | 6.71e-13 | 71 |
dense mesenchyme tissue | 7.50e-13 | 73 |
epithelial vesicle | 1.00e-12 | 78 |
paraxial mesoderm | 1.53e-12 | 72 |
presumptive paraxial mesoderm | 1.53e-12 | 72 |
artery | 4.11e-12 | 42 |
arterial blood vessel | 4.11e-12 | 42 |
arterial system | 4.11e-12 | 42 |
multilaminar epithelium | 7.36e-12 | 83 |
skeletal muscle tissue | 3.79e-11 | 62 |
striated muscle tissue | 3.79e-11 | 62 |
myotome | 3.79e-11 | 62 |
systemic artery | 1.36e-10 | 33 |
systemic arterial system | 1.36e-10 | 33 |
muscle tissue | 1.85e-10 | 64 |
musculature | 1.85e-10 | 64 |
musculature of body | 1.85e-10 | 64 |
integument | 1.07e-09 | 46 |
integumental system | 1.07e-09 | 46 |
skin of body | 1.10e-09 | 41 |
trunk mesenchyme | 1.28e-09 | 122 |
unilaminar epithelium | 2.98e-09 | 148 |
surface structure | 3.06e-09 | 99 |
epithelial tube open at both ends | 6.15e-09 | 59 |
blood vessel | 6.15e-09 | 59 |
blood vasculature | 6.15e-09 | 59 |
vascular cord | 6.15e-09 | 59 |
mesenchyme | 9.64e-09 | 160 |
entire embryonic mesenchyme | 9.64e-09 | 160 |
trunk | 3.52e-08 | 199 |
vessel | 6.72e-08 | 68 |