FFCP PHASE1:Hg19::chr13:28543409..28543420,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |HGNC=1806 | ||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |UniProt=Q99626 | ||
|association_with_transcript=-92bp_to_NM_001265,uc001urv.2_5end | |association_with_transcript=-92bp_to_NM_001265,uc001urv.2_5end | ||
|cluster_id=chr13:28543409..28543420,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_8_at_CDX2_5end | |description=CAGE_peak_8_at_CDX2_5end | ||
|id=chr13:28543409..28543420,- | |id=chr13:28543409..28543420,- | ||
|ontology_enrichment_celltype=CL:0002563!4.91e-14!4;CL:0002253!6.62e-13!2;CL:0002322!2.09e-10!5;CL:0002178!3.63e-08!3 | |ontology_enrichment_celltype=CL:0002563!4.91e-14!4;CL:0002253!6.62e-13!2;CL:0002322!2.09e-10!5;CL:0002178!3.63e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002563;8.56e-31;4!CL:0002253;9.31e-28;2!CL:0002535;8.32e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.74e-31,4;CL:0002253,9.31e-28,2;CL:0002535,8.60e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.57e-14;1!UBERON:0003104;2.03e-07;31 | |||
|ontology_enrichment_disease=DOID:3119!6.49e-19!14;DOID:4929!7.67e-12!2;DOID:299!4.22e-10!25;DOID:305!5.67e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:3119;3.25e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,3.25e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0005409!4.65e-42!35;UBERON:0000160!1.84e-37!27;UBERON:0000059!2.34e-25!11;UBERON:0001155!4.95e-23!9;UBERON:0004907!4.37e-19!5;UBERON:0004921!2.19e-16!129;UBERON:0004185!2.19e-16!129;UBERON:0001007!2.73e-14!155;UBERON:0001555!2.73e-14!155;UBERON:0007026!2.73e-14!155;UBERON:0001242!4.91e-14!4;UBERON:0001262!4.91e-14!4;UBERON:0004786!4.91e-14!4;UBERON:0004808!4.91e-14!4;UBERON:0001277!4.91e-14!4;UBERON:0001052!5.84e-14!4;UBERON:0002108!4.76e-13!14;UBERON:0004119!1.04e-12!169;UBERON:0000925!1.04e-12!169;UBERON:0006595!1.04e-12!169;UBERON:0003350!2.53e-11!5;UBERON:0000077!1.26e-07!130;UBERON:0002294!1.45e-07!7;UBERON:0001173!1.45e-07!7;UBERON:0004912!1.45e-07!7;UBERON:0001046!1.52e-07!19;UBERON:0001154!4.25e-07!1;UBERON:0001153!4.25e-07!1;UBERON:0003929!4.82e-07!54;UBERON:0002114!5.67e-07!12;UBERON:0004913!6.38e-07!1;UBERON:0003703!6.38e-07!1;UBERON:0001174!6.38e-07!1;UBERON:0004914!6.38e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.15e-72;17!UBERON:0000059;3.67e-58;11!UBERON:0005409;2.36e-56;22!UBERON:0001155;2.10e-52;9!UBERON:0004907;1.40e-42;5!UBERON:0004921;3.45e-35;33!UBERON:0001242;8.56e-31;4!UBERON:0001262;8.56e-31;4!UBERON:0004786;8.56e-31;4!UBERON:0004808;8.56e-31;4!UBERON:0001277;8.56e-31;4!UBERON:0001052;1.16e-30;4!UBERON:0000485;6.60e-18;7!UBERON:0003929;6.60e-18;7!UBERON:0003350;9.46e-16;8!UBERON:0001154;2.57e-14;1!UBERON:0001153;2.57e-14;1!UBERON:0009854;2.57e-14;1!UBERON:0001555;2.41e-12;54!UBERON:0002108;1.21e-11;4!UBERON:0001007;1.02e-10;81!UBERON:0006955;8.32e-08;2!UBERON:0004801;8.32e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.33e-72,17;UBERON:0000059,2.84e-58,11;UBERON:0001155,1.60e-52,9;UBERON:0005409,7.64e-50,25;UBERON:0004907,1.32e-42,5;UBERON:0001242,7.74e-31,4;UBERON:0001262,7.74e-31,4;UBERON:0004786,7.74e-31,4;UBERON:0004808,7.74e-31,4;UBERON:0001277,7.74e-31,4;UBERON:0001052,1.16e-30,4;UBERON:0001046,1.66e-17,19;UBERON:0004921,1.95e-17,118;UBERON:0003350,9.00e-16,8;UBERON:0001154,2.41e-14,1;UBERON:0001153,2.41e-14,1;UBERON:0001045,2.41e-14,1;UBERON:0000485,4.33e-14,9;UBERON:0001007,6.09e-14,145;UBERON:0001555,6.09e-14,145;UBERON:0007026,6.09e-14,145;UBERON:0004119,1.67e-12,160;UBERON:0000925,1.67e-12,160;UBERON:0006595,1.67e-12,160;UBERON:0002108,1.21e-11,4;UBERON:0011216,6.12e-10,223;UBERON:0006955,8.60e-08,2;UBERON:0004801,8.60e-08,2 | |||
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|short_description=p8@CDX2 | |short_description=p8@CDX2 | ||
}} | }} |
Latest revision as of 23:39, 16 September 2015
Short description: | p8@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -92bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.74e-31 | 4 |
epithelial cell of large intestine | 9.31e-28 | 2 |
epithelial cell of cervix | 8.60e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.33e-72 | 17 |
large intestine | 2.84e-58 | 11 |
colon | 1.60e-52 | 9 |
gastrointestinal system | 7.64e-50 | 25 |
lower digestive tract | 1.32e-42 | 5 |
intestinal mucosa | 7.74e-31 | 4 |
wall of intestine | 7.74e-31 | 4 |
gastrointestinal system mucosa | 7.74e-31 | 4 |
gastrointestinal system epithelium | 7.74e-31 | 4 |
intestinal epithelium | 7.74e-31 | 4 |
rectum | 1.16e-30 | 4 |
hindgut | 1.66e-17 | 19 |
subdivision of digestive tract | 1.95e-17 | 118 |
epithelium of mucosa | 9.00e-16 | 8 |
vermiform appendix | 2.41e-14 | 1 |
caecum | 2.41e-14 | 1 |
midgut | 2.41e-14 | 1 |
simple columnar epithelium | 4.33e-14 | 9 |
digestive system | 6.09e-14 | 145 |
digestive tract | 6.09e-14 | 145 |
primitive gut | 6.09e-14 | 145 |
endoderm-derived structure | 1.67e-12 | 160 |
endoderm | 1.67e-12 | 160 |
presumptive endoderm | 1.67e-12 | 160 |
small intestine | 1.21e-11 | 4 |
organ system subdivision | 6.12e-10 | 223 |
uterine epithelium | 8.60e-08 | 2 |
cervix epithelium | 8.60e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.25e-09 | 14 |