FFCP PHASE1:Hg19::chr2:37551788..37551799,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23683 | |EntrezGene=23683 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9408 | |HGNC=9408 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-275bp_to_ENST00000477132_5end | |association_with_transcript=-275bp_to_ENST00000477132_5end | ||
|cluster_id=chr2:37551788..37551799,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_12_at_PRKD3_5end | |description=CAGE_peak_12_at_PRKD3_5end | ||
|id=chr2:37551788..37551799,- | |id=chr2:37551788..37551799,- | ||
|ontology_enrichment_celltype=CL:0000148!3.08e-10!10;CL:0000541!3.08e-10!10;CL:0000147!5.84e-10!14 | |ontology_enrichment_celltype=CL:0000148!3.08e-10!10;CL:0000541!3.08e-10!10;CL:0000147!5.84e-10!14 | ||
|ontology_enrichment_celltype_v019=CL:0000148;8.59e-65;10!CL:0002567;2.61e-54;3!CL:0000147;2.47e-46;14!CL:0000710;1.82e-32;20!CL:0000075;4.64e-24;27!CL:0002566;8.94e-20;1!CL:0002077;6.35e-18;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.49e-64,10;CL:0000541,1.49e-64,10;CL:0002567,6.50e-54,3;CL:0000147,3.66e-46,14;CL:0000710,2.39e-32,20;CL:0000075,5.68e-24,27;CL:0002566,8.95e-20,1;CL:0002077,4.92e-19,34;CL:0000333,4.89e-15,41;CL:0000133,1.46e-10,59;CL:0000221,1.12e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.72e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.49e-10,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001389;3.25e-19;1!UBERON:0000026;3.25e-19;1!UBERON:0008784;3.25e-19;1!UBERON:0006058;3.25e-19;1!UBERON:0003663;3.25e-19;1!UBERON:0004256;3.25e-19;1!UBERON:0004708;3.25e-19;1!UBERON:0002101;3.25e-19;1!UBERON:0004709;3.25e-19;1!UBERON:0002529;3.25e-19;1!UBERON:0010538;3.25e-19;1!UBERON:0003661;3.25e-19;1!UBERON:0010890;3.25e-19;1!UBERON:0002471;3.25e-19;1!UBERON:0001383;3.25e-19;1!UBERON:0010758;3.25e-19;1!UBERON:0010707;3.25e-19;1!UBERON:0000978;3.25e-19;1!UBERON:0002103;3.25e-19;1!UBERON:0001665;3.25e-19;1!UBERON:0003823;3.25e-19;1!UBERON:0000154;3.25e-19;1!UBERON:0010709;3.25e-19;1!UBERON:0005090;2.72e-10;2!UBERON:0001630;2.72e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,3.25e-19,1;UBERON:0001389,3.25e-19,1;UBERON:0000026,3.25e-19,1;UBERON:0008784,3.25e-19,1;UBERON:0006058,3.25e-19,1;UBERON:0003663,3.25e-19,1;UBERON:0004256,3.25e-19,1;UBERON:0004708,3.25e-19,1;UBERON:0002101,3.25e-19,1;UBERON:0004709,3.25e-19,1;UBERON:0002529,3.25e-19,1;UBERON:0010538,3.25e-19,1;UBERON:0003661,3.25e-19,1;UBERON:0010890,3.25e-19,1;UBERON:0002471,3.25e-19,1;UBERON:0001383,3.25e-19,1;UBERON:0004357,3.25e-19,1;UBERON:0004347,3.25e-19,1;UBERON:0005420,3.25e-19,1;UBERON:0005732,3.25e-19,1;UBERON:0010758,3.25e-19,1;UBERON:0010707,3.25e-19,1;UBERON:0000978,3.25e-19,1;UBERON:0002103,3.25e-19,1;UBERON:0001665,3.25e-19,1;UBERON:0003823,3.25e-19,1;UBERON:0000154,3.25e-19,1;UBERON:0010709,3.25e-19,1;UBERON:0005733,3.25e-19,1;UBERON:0005730,3.25e-19,1;UBERON:0005090,2.72e-10,2;UBERON:0001630,2.72e-10,2 | |||
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| ||
|short_description=p12@PRKD3 | |short_description=p12@PRKD3 | ||
}} | }} |
Latest revision as of 02:09, 17 September 2015
Short description: | p12@PRKD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PRKD3_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -275bp_to_ENST00000477132_5end |
EntrezGene: | PRKD3 |
HGNC: | 9408 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.49e-64 | 10 |
melanoblast | 1.49e-64 | 10 |
light melanocyte | 6.50e-54 | 3 |
pigment cell | 3.66e-46 | 14 |
neurecto-epithelial cell | 2.39e-32 | 20 |
columnar/cuboidal epithelial cell | 5.68e-24 | 27 |
dark melanocyte | 8.95e-20 | 1 |
ecto-epithelial cell | 4.92e-19 | 34 |
migratory neural crest cell | 4.89e-15 | 41 |
neurectodermal cell | 1.46e-10 | 59 |
ectodermal cell | 1.12e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
hindlimb bud | 3.25e-19 | 1 |
soleus muscle | 3.25e-19 | 1 |
appendage | 3.25e-19 | 1 |
lower limb segment | 3.25e-19 | 1 |
multi-limb segment region | 3.25e-19 | 1 |
hindlimb muscle | 3.25e-19 | 1 |
hindlimb zeugopod muscle | 3.25e-19 | 1 |
paired limb/fin | 3.25e-19 | 1 |
limb | 3.25e-19 | 1 |
pelvic appendage | 3.25e-19 | 1 |
limb segment | 3.25e-19 | 1 |
paired limb/fin segment | 3.25e-19 | 1 |
limb muscle | 3.25e-19 | 1 |
pelvic complex muscle | 3.25e-19 | 1 |
zeugopod | 3.25e-19 | 1 |
muscle of leg | 3.25e-19 | 1 |
paired limb/fin bud | 3.25e-19 | 1 |
limb bud | 3.25e-19 | 1 |
pelvic appendage bud | 3.25e-19 | 1 |
limb/fin field | 3.25e-19 | 1 |
subdivision of organism along appendicular axis | 3.25e-19 | 1 |
appendage girdle complex | 3.25e-19 | 1 |
leg | 3.25e-19 | 1 |
hindlimb | 3.25e-19 | 1 |
triceps surae | 3.25e-19 | 1 |
hindlimb zeugopod | 3.25e-19 | 1 |
posterior region of body | 3.25e-19 | 1 |
pelvic complex | 3.25e-19 | 1 |
limb field | 3.25e-19 | 1 |
hindlimb/pelvic fin field | 3.25e-19 | 1 |
muscle structure | 2.72e-10 | 2 |
muscle organ | 2.72e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.49e-10 | 2 |