FFCP PHASE1:Hg19::chr20:5591626..5591677,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:5591626..5591677,-
|short_description=p1@GPCPD1
|description=CAGE_peak_1_at_GPCPD1_5end
|association_with_transcript=0bp_to_ENST00000378992,ENST0000037901...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56261 | |EntrezGene=56261 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26957 | |HGNC=26957 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDI1,Q9NPB8 | |UniProt=E9PDI1,Q9NPB8 | ||
|association_with_transcript=0bp_to_ENST00000378992,ENST00000379019,NM_019593,uc002wme.3_5end | |||
|cluster_id=chr20:5591626..5591677,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_GPCPD1_5end | |||
|id=chr20:5591626..5591677,- | |||
|ontology_enrichment_celltype=CL:0000738!1.59e-35!140;CL:0002031!9.72e-32!124;CL:0000037!1.00e-31!172;CL:0000566!1.00e-31!172;CL:0002087!3.89e-31!119;CL:0002032!6.18e-30!165;CL:0000837!6.18e-30!165;CL:0000766!5.00e-29!76;CL:0000988!5.53e-28!182;CL:0002057!4.95e-27!42;CL:0000839!3.02e-25!70;CL:0000557!5.30e-25!71;CL:0002009!2.00e-24!65;CL:0002194!5.65e-24!63;CL:0000576!5.65e-24!63;CL:0000040!5.65e-24!63;CL:0000559!5.65e-24!63;CL:0000860!3.86e-23!45;CL:0000763!2.94e-22!112;CL:0000049!2.94e-22!112;CL:0000838!1.78e-07!52;CL:0000542!2.13e-07!53;CL:0000051!2.13e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.97e-20;33!CL:0002057;1.97e-20;33!CL:0000473;6.38e-19;39!CL:0000234;6.38e-19;39!CL:0000576;3.52e-16;48!CL:0000766;1.81e-14;69!CL:0002087;5.40e-10;104!CL:0000738;2.94e-08;136!CL:0000763;1.07e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.52e-38,136;CL:0002031,4.38e-34,120;CL:0000037,1.39e-33,168;CL:0002087,1.60e-33,115;CL:0000766,3.28e-32,72;CL:0002032,8.96e-32,161;CL:0000837,8.96e-32,161;CL:0000988,3.35e-30,177;CL:0000473,4.17e-29,48;CL:0000234,4.17e-29,48;CL:0000839,2.66e-28,66;CL:0000557,5.29e-28,67;CL:0002009,1.39e-27,61;CL:0002194,3.63e-27,59;CL:0000576,3.63e-27,59;CL:0000040,3.63e-27,59;CL:0000559,3.63e-27,59;CL:0000860,4.95e-27,42;CL:0002057,4.95e-27,42;CL:0000763,3.19e-24,108;CL:0000049,3.19e-24,108;CL:0000838,1.78e-07,52;CL:0000542,2.13e-07,53;CL:0000051,2.13e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.13e-19;42!CL:0000049;1.40e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.81e-26!102;UBERON:0003061!5.81e-26!102;UBERON:0002193!3.38e-21!112;UBERON:0002371!4.93e-18!80;UBERON:0001474!2.27e-16!86;UBERON:0007023!7.89e-15!115;UBERON:0004765!4.67e-13!101;UBERON:0001434!4.67e-13!101;UBERON:0002405!1.18e-10!115;UBERON:0000178!3.26e-08!15;UBERON:0000179!3.26e-08!15;UBERON:0000463!3.26e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.25e-08;15!UBERON:0000179;3.25e-08;15!UBERON:0000463;3.25e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.62e-28,98;UBERON:0003061,2.62e-28,98;UBERON:0002193,4.28e-23,108;UBERON:0002371,3.47e-20,76;UBERON:0001474,2.83e-18,82;UBERON:0002405,1.03e-16,93;UBERON:0007023,9.23e-15,114;UBERON:0004765,1.38e-14,90;UBERON:0001434,1.17e-13,100;UBERON:0000178,3.26e-08,15;UBERON:0000179,3.26e-08,15;UBERON:0000463,3.26e-08,15 | |||
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| ||
|short_description=p1@GPCPD1 | |||
}} | }} |
Latest revision as of 04:03, 17 September 2015
Short description: | p1@GPCPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPCPD1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000378992, ENST00000379019, NM_019593, uc002wme.3_5end |
EntrezGene: | GPCPD1 |
HGNC: | 26957 |
UniProt: | E9PDI1Q9NPB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.52e-38 | 136 |
hematopoietic lineage restricted progenitor cell | 4.38e-34 | 120 |
hematopoietic stem cell | 1.39e-33 | 168 |
nongranular leukocyte | 1.60e-33 | 115 |
myeloid leukocyte | 3.28e-32 | 72 |
hematopoietic oligopotent progenitor cell | 8.96e-32 | 161 |
hematopoietic multipotent progenitor cell | 8.96e-32 | 161 |
hematopoietic cell | 3.35e-30 | 177 |
defensive cell | 4.17e-29 | 48 |
phagocyte | 4.17e-29 | 48 |
myeloid lineage restricted progenitor cell | 2.66e-28 | 66 |
granulocyte monocyte progenitor cell | 5.29e-28 | 67 |
macrophage dendritic cell progenitor | 1.39e-27 | 61 |
monopoietic cell | 3.63e-27 | 59 |
monocyte | 3.63e-27 | 59 |
monoblast | 3.63e-27 | 59 |
promonocyte | 3.63e-27 | 59 |
classical monocyte | 4.95e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.95e-27 | 42 |
myeloid cell | 3.19e-24 | 108 |
common myeloid progenitor | 3.19e-24 | 108 |
lymphoid lineage restricted progenitor cell | 1.78e-07 | 52 |
lymphocyte | 2.13e-07 | 53 |
common lymphoid progenitor | 2.13e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.62e-28 | 98 |
blood island | 2.62e-28 | 98 |
hemolymphoid system | 4.28e-23 | 108 |
bone marrow | 3.47e-20 | 76 |
bone element | 2.83e-18 | 82 |
immune system | 1.03e-16 | 93 |
adult organism | 9.23e-15 | 114 |
skeletal element | 1.38e-14 | 90 |
skeletal system | 1.17e-13 | 100 |
blood | 3.26e-08 | 15 |
haemolymphatic fluid | 3.26e-08 | 15 |
organism substance | 3.26e-08 | 15 |