FFCP PHASE1:Hg19::chr8:17780306..17780323,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:17780306..17780323,+
|short_description=p3@PCM1
|description=CAGE_peak_3_at_PCM1_5end
|association_with_transcript=-25bp_to_ENST00000325083_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5108 | |EntrezGene=5108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8727 | |HGNC=8727 | ||
|TSSclassifier=strong | |||
|UniProt=Q15154 | |UniProt=Q15154 | ||
|association_with_transcript=-25bp_to_ENST00000325083_5end | |||
|cluster_id=chr8:17780306..17780323,+ | |||
|description=CAGE_peak_3_at_PCM1_5end | |||
|id=chr8:17780306..17780323,+ | |||
|ontology_enrichment_celltype=CL:0002032!1.10e-20!165;CL:0000837!1.10e-20!165;CL:0000037!2.48e-20!172;CL:0000566!2.48e-20!172;CL:0000738!1.42e-18!140;CL:0002087!1.45e-18!119;CL:0002031!1.04e-17!124;CL:0000988!1.05e-17!182;CL:0000763!1.57e-15!112;CL:0000049!1.57e-15!112;CL:0000557!1.59e-13!71;CL:0000860!1.82e-13!45;CL:0000766!2.70e-13!76;CL:0000839!2.85e-13!70;CL:0002057!3.06e-13!42;CL:0002194!5.50e-13!63;CL:0000576!5.50e-13!63;CL:0000040!5.50e-13!63;CL:0000559!5.50e-13!63;CL:0002009!6.40e-13!65;CL:0000791!5.97e-08!18;CL:0000789!5.97e-08!18;CL:0002420!5.97e-08!18;CL:0002419!5.97e-08!18;CL:0000790!5.97e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.50e-10;33!CL:0002057;1.50e-10;33!CL:0000576;4.72e-10;48!CL:0000791;4.36e-08;18!CL:0000789;4.36e-08;18!CL:0002419;4.36e-08;18!CL:0000473;6.23e-08;39!CL:0000234;6.23e-08;39!CL:0002087;6.93e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,5.07e-20,161;CL:0000837,5.07e-20,161;CL:0000037,1.03e-19,168;CL:0000738,6.02e-18,136;CL:0002087,6.78e-18,115;CL:0000988,1.39e-17,177;CL:0002031,4.85e-17,120;CL:0000763,4.13e-15,108;CL:0000049,4.13e-15,108;CL:0000860,2.63e-13,42;CL:0002057,2.63e-13,42;CL:0000557,3.99e-13,67;CL:0000766,6.99e-13,72;CL:0000839,7.16e-13,66;CL:0002194,1.33e-12,59;CL:0000576,1.33e-12,59;CL:0000040,1.33e-12,59;CL:0000559,1.33e-12,59;CL:0002009,1.58e-12,61;CL:0000473,1.43e-11,48;CL:0000234,1.43e-11,48;CL:0000791,5.50e-08,18;CL:0000789,5.50e-08,18;CL:0002420,5.50e-08,18;CL:0002419,5.50e-08,18;CL:0000790,5.50e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002057;7.24e-10;42!CL:0000790;4.36e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.01e-11!102;UBERON:0003061!1.01e-11!102;UBERON:0002371!9.90e-11!80;UBERON:0001474!2.40e-10!86;UBERON:0002193!1.00e-09!112;UBERON:0004765!2.56e-08!101;UBERON:0001434!2.56e-08!101;UBERON:0002405!5.28e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.05e-11,98;UBERON:0003061,2.05e-11,98;UBERON:0002371,1.93e-10,76;UBERON:0001474,6.69e-10,82;UBERON:0002193,1.63e-09,108;UBERON:0004765,3.42e-09,90;UBERON:0002405,1.31e-08,93;UBERON:0001434,6.94e-08,100 | |||
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| ||
|short_description=p3@PCM1 | |||
}} | }} |
Latest revision as of 05:37, 17 September 2015
Short description: | p3@PCM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PCM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -25bp_to_ENST00000325083_5end |
EntrezGene: | PCM1 |
HGNC: | 8727 |
UniProt: | Q15154 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 5.07e-20 | 161 |
hematopoietic multipotent progenitor cell | 5.07e-20 | 161 |
hematopoietic stem cell | 1.03e-19 | 168 |
leukocyte | 6.02e-18 | 136 |
nongranular leukocyte | 6.78e-18 | 115 |
hematopoietic cell | 1.39e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 4.85e-17 | 120 |
myeloid cell | 4.13e-15 | 108 |
common myeloid progenitor | 4.13e-15 | 108 |
classical monocyte | 2.63e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.63e-13 | 42 |
granulocyte monocyte progenitor cell | 3.99e-13 | 67 |
myeloid leukocyte | 6.99e-13 | 72 |
myeloid lineage restricted progenitor cell | 7.16e-13 | 66 |
monopoietic cell | 1.33e-12 | 59 |
monocyte | 1.33e-12 | 59 |
monoblast | 1.33e-12 | 59 |
promonocyte | 1.33e-12 | 59 |
macrophage dendritic cell progenitor | 1.58e-12 | 61 |
defensive cell | 1.43e-11 | 48 |
phagocyte | 1.43e-11 | 48 |
mature alpha-beta T cell | 5.50e-08 | 18 |
alpha-beta T cell | 5.50e-08 | 18 |
immature T cell | 5.50e-08 | 18 |
mature T cell | 5.50e-08 | 18 |
immature alpha-beta T cell | 5.50e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.05e-11 | 98 |
blood island | 2.05e-11 | 98 |
bone marrow | 1.93e-10 | 76 |
bone element | 6.69e-10 | 82 |
hemolymphoid system | 1.63e-09 | 108 |
skeletal element | 3.42e-09 | 90 |
immune system | 1.31e-08 | 93 |
skeletal system | 6.94e-08 | 100 |